PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.C00492.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 339aa MW: 38462.5 Da PI: 4.5022 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33 | 1.1e-10 | 262 | 302 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Migut.C00492.1.p 262 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 302 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-14 | 251 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.326 | 252 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-12 | 257 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-11 | 258 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.61E-11 | 261 | 306 | No hit | No description |
Pfam | PF00010 | 4.2E-8 | 262 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MEFVESFLDQ EWESLSKMFS IGENNPDLLP FPSNYCENMA NEGSSLFLPS SSCEIDHTFH 60 NNVYRVPQES SNSNNNGVSF HHHEEEYLTN NTFDECMNYY TSMMVPVFSD DVIMEEMFDD 120 QSGGHNNGET DDSCKDIIRL KRKYEAEEEE PIIDEPSKRK PRVSRNKNQK AANQSKKKKK 180 MIGEDEEDIN NEENNMIISN DGGGNNQISS SSCSSEDIHD SITNSNNNAS ESKLDSVSLK 240 SLNGKAKANR GSATDPQSLY ARKRRERINE RLKILQNLVP NGTKVDISTM LEEAVQYVKF 300 LQLQIKLLSS DDLWMYAPIA YNGMDIGMYQ KISPNFCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 157 | 179 | KRKPRVSRNKNQKAANQSKKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.C00492.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP257512 | 2e-72 | KP257512.1 Salvia miltiorrhiza clone 79 basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012851556.1 | 0.0 | PREDICTED: transcription factor bHLH84 | ||||
Swissprot | Q7XHI9 | 1e-52 | BH084_ARATH; Transcription factor bHLH84 | ||||
TrEMBL | A0A022QD19 | 0.0 | A0A022QD19_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.C00492.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA639 | 22 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 1e-53 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.C00492.1.p |