PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.C00446.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family bHLH
Protein Properties Length: 318aa    MW: 35257.2 Da    PI: 5.2543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.C00446.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.4e-10167215355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR+ri +++  L+el+P +    +k   Ka++L + ++Y++sLq
  Migut.C00446.1.p 167 NSHSLAERVRRERIGERMKLLQELVPGC----NKITGKAMMLDEIINYVQSLQ 215
                       58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.84E-11162219No hitNo description
SuperFamilySSF474595.1E-17162232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16164232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-8167215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-10170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MASEESGDNN RVFHQSAPFY GGSVNWDSFG NSNIVLHPND FANQIQTMGS SSQFAHFPSD  60
SGFVDIVSKT IPSFRSGSFS EMHTSLDCAA ESDYSPYGKR KRGASPKNAE EEEEEKKDCC  120
VEKSDLAKEE DEEKQKSVKK ADNNSVDLEP SKENYLHMRA KRGQATNSHS LAERVRRERI  180
GERMKLLQEL VPGCNKITGK AMMLDEIINY VQSLQQQVEF LSMKLATVNP EVNVDIDRIL  240
SKDILHLRGG NITALGIAPS FNPSHPFQGT FNATPPFNPL ISQHTWNNEL QGILQMGFDP  300
DPSNSSLGQN GPSRMEL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.C00446.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012841241.10.0PREDICTED: transcription factor bHLH74-like
SwissprotQ6NKN93e-68BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A022R0H11e-160A0A022R0H1_ERYGU; Uncharacterized protein
STRINGMigut.C00446.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52502435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]