PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B01912.1.p | ||||||||
Common Name | MIMGU_mgv1a007575mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 404aa MW: 44345.1 Da PI: 7.5519 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.9 | 1.8e-13 | 240 | 286 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YIk+L Migut.B01912.1.p 240 MNHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYIKEL 286 589************************6.....4****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.0E-11 | 35 | 86 | IPR025610 | Transcription factor MYC/MYB N-terminal |
Pfam | PF14215 | 2.7E-19 | 93 | 169 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.739 | 237 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.31E-15 | 240 | 290 | No hit | No description |
SuperFamily | SSF47459 | 1.11E-17 | 240 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-11 | 241 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-16 | 241 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-16 | 243 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MDELILSSCS KSSSSYSVNM MCSNDERQPP TISVLQKKLK HLLQTQTDFW SYAIFWQSCS 60 SSTSNVLNWG DGYFQGTANY SNETTKKLAV DEHGGGVVGK AFNSGSLVWL TGGNQLKLYN 120 CERAKQAEAH GMQTMVCIPT ATPRGVVELA SHLIIHENWT LLQQVQHTFP AFAFQPEIIM 180 DSDSDCPTTT TDNNTNTNIN KKRAPMASSS TAATTGIISG GKKRGRKPAG PRGPDALPTM 240 NHVEAERQRR EKLNHRFYAL RSVVPNVSRM DKASLLSDAV SYIKELKSRL DDLQTNNVNK 300 LLSSSSSVVK TETDDDDEPI ISSSSLVEVK MVGVDGMIRV QSEKSNYPSA RLMDAIRDLK 360 LEIQHASMSC VNNIMIQDVV VTLPSDGPLT SENALRTALL HRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-21 | 240 | 290 | 7 | 57 | Transcription factor MYC2 |
5gnj_B | 4e-21 | 240 | 290 | 7 | 57 | Transcription factor MYC2 |
5gnj_E | 4e-21 | 240 | 290 | 7 | 57 | Transcription factor MYC2 |
5gnj_F | 4e-21 | 240 | 290 | 7 | 57 | Transcription factor MYC2 |
5gnj_G | 4e-21 | 240 | 290 | 7 | 57 | Transcription factor MYC2 |
5gnj_I | 4e-21 | 240 | 290 | 7 | 57 | Transcription factor MYC2 |
5gnj_M | 4e-21 | 240 | 290 | 7 | 57 | Transcription factor MYC2 |
5gnj_N | 4e-21 | 240 | 290 | 7 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B01912.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012843895.1 | 0.0 | PREDICTED: transcription factor MYC4 | ||||
TrEMBL | A0A022QXF7 | 0.0 | A0A022QXF7_ERYGU; Uncharacterized protein | ||||
STRING | Migut.B01912.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1072 | 21 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 2e-48 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.B01912.1.p |