PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B01884.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family bHLH
Protein Properties Length: 550aa    MW: 60206.8 Da    PI: 8.6257
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B01884.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.8e-13391437455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Migut.B01884.1.p 391 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 437
                       799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.0E-5352240IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85387436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-18390448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.86E-14390441No hitNo description
Gene3DG3DSA:4.10.280.104.2E-18391447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10391437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-17393442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.63E-5494537No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MKLGLGMGGV GWSNEDKATA AAVLGTKAFD YLISSSVSAE CSLMAIGNNE NLQNKLSDLV  60
EHQHPTRISW NYAIFWQLSR SKSGEFVLGW GDGCCREPRE NEGSEFTRNP KSRIEDESLQ  120
RMRKRVLQRM HTLFGGTDED SYAFGLDKVT DTEMFFLASM YFSFPRGVGG PGKCFGSSKY  180
VWLTNAMVTP VDYCVRSFLA KSAGMQTIVL IPTDVGVVEL GSARYIAENS EVLNAIGSSF  240
SSSSRNKQVA AVGPMKKDSI SNGIFSNPVA ATRQETVTTK IFGQELNAVR PQIMEKVDGR  300
NRDADADVNG NRMPTRNGFH PSAWTNSNYG NATGASSMSV ISRPQSVESE HSDIEAASCK  360
LEEPVGVLLL EDKKPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM  420
DKASLLGDAI AYITELQRKV KDMESERGGE ASASEASNKN VLEVQEWGSR VEVEAGRDKV  480
TVRVSCPVGA HPASRVIRAI KDAGGNIVDA QMATGSERVF HTFVVKSNGS DRLTKEKMIE  540
AFSRGSNSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-29385447264Transcription factor MYC2
5gnj_B1e-29385447264Transcription factor MYC2
5gnj_E1e-29385447264Transcription factor MYC2
5gnj_F1e-29385447264Transcription factor MYC2
5gnj_G1e-29385447264Transcription factor MYC2
5gnj_I1e-29385447264Transcription factor MYC2
5gnj_M1e-29385447264Transcription factor MYC2
5gnj_N1e-29385447264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372380KKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B01884.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843863.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A022QXC70.0A0A022QXC7_ERYGU; Uncharacterized protein
STRINGMigut.B01884.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-156bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]