PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B01754.2.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 354aa    MW: 38540.4 Da    PI: 6.1756
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B01754.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74e-0893117126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ykt+lC+ f+  GtC+y  +C+FaH 
  Migut.B01754.2.p  93 YKTKLCCKFRI-GTCPYITNCNFAHN 117
                       9**********.*************7 PP
2zf-CCCH17.47.7e-06171196126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       yk + C+ f+    C+yG++C+F H+
  Migut.B01754.2.p 171 YKGRHCKKFYTEEGCPYGESCTFLHD 196
                       78888********************7 PP
3zf-CCCH40.83.7e-13241266126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +kt++C+ +  tG+C++G +C+FaHg
  Migut.B01754.2.p 241 WKTRICNKWELTGYCPFGTKCHFAHG 266
                       8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.92E-889123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-1490125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.20292119IPR000571Zinc finger, CCCH-type
SMARTSM003560.002392118IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-593117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-9168198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7169198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.948170198IPR000571Zinc finger, CCCH-type
SMARTSM003560.25170197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-17236270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-10237271IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-8240267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.981240268IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10241266IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDYPWENGFS SGNVVQVLSG NPTNTGNENM GPTFEDQAMW ATEDDYGLWN AEDTRQSQSR  60
LESDQPPNKR SRTFQSVDLE SSNRSKAIGK MFYKTKLCCK FRIGTCPYIT NCNFAHNMEE  120
LRKPPPNWQE IVAAAAAHEE EQGGGGGLTS GQREEYQIPI LGVGDEAQRN YKGRHCKKFY  180
TEEGCPYGES CTFLHDEQSK TRESVAISLG PGSGGGGGYS NGGGGYSNGG GGGSVLKPSN  240
WKTRICNKWE LTGYCPFGTK CHFAHGAAEL SRFGGGQMES EVQDSSNLDA KQGAGPTTAS  300
VDTVLRSEGY HIGVQSQRLM SNAIQKIGQR SSTQKWKGPD KISKIYGDWI DDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B01754.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843735.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
RefseqXP_012843736.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
SwissprotQ9LQM31e-117C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A2G9G2L71e-164A0A2G9G2L7_9LAMI; CCCH-type Zn-finger protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-106C3H family protein