PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B01746.2.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 320aa    MW: 35704 Da    PI: 4.8705
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B01746.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.3e-10229254126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ++t+lC  + rtG C +G+ C+FaHg
  Migut.B01746.2.p 229 WRTRLCTKWERTGCCTFGSECHFAHG 254
                       79***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.2E-898131IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.976100125IPR000571Zinc finger, CCCH-type
SMARTSM003560.0033100124IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.798169197IPR000571Zinc finger, CCCH-type
SMARTSM003562.1170196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6173200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-6174199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-8225259IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-13227259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333228256IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6228255IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7229254IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MMDCNQGSGF ADGNVVQFES GNLENDVNEN PCLGSIDRAV SAIEDGIQNR ETSVDINPMS  60
NQEGTLSQFG VGSEPQNKRP RSSLMVDLMA SDRSKVIKML YKTKLCKFRN GNCLAKNCNY  120
AHSSEELREP PKWQEIFAEP PKEEDLELSE TREVFPIPVV ELSGETQGIS MRQYCLNYYT  180
EEGCLYGENC NFIHEEHDRE SVAICLLPGN DCVSEEGNVS KPIVRFANWR TRLCTKWERT  240
GCCTFGSECH FAHGTAELQR YGGGPVYGAV NDSPVLAAKA SARRRLPNLI HKTGEIPSRK  300
WSGPEKISKI YGDWIDDLQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B01746.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843723.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
RefseqXP_012843724.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
RefseqXP_012843725.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
TrEMBLA0A2G9G2L72e-89A0A2G9G2L7_9LAMI; CCCH-type Zn-finger protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-49C3H family protein