PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B01577.1.p
Common NameLOC105964018, MIMGU_mgv1a012669mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GATA
Protein Properties Length: 244aa    MW: 26577.5 Da    PI: 6.7132
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B01577.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.3e-18160194135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Migut.B01577.1.p 160 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 194
                       *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.9E-741241IPR016679Transcription factor, GATA, plant
SMARTSM004015.0E-16154204IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.648154190IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.9E-14155191IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.03E-15157217No hitNo description
CDDcd002025.49E-15159206No hitNo description
PROSITE patternPS003440160185IPR000679Zinc finger, GATA-type
PfamPF003206.3E-16160194IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDVYAVDDLL DLPSDDFFAS SSSSGGAAPT AAVSDYLHHH PSTAYFEQYS SVPSYSTDFS  60
DVLSVPTEDA AELEWLSTYM DDSFVDFPAG EPSAAASLQL KSAAGFHGRA RSKRSRPSSA  120
SLAVEIPRPI DVGGVSVKKE EGSFVRNGRG AEDAEVARRC THCASEKTPQ WRTGPLGPKT  180
LCNACGVRYK SGRLVPEYRP AASPTFVLTQ HSNSHRKVLE LRRQKEMLLQ QQQEAYGRHF  240
RVC*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B01577.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3580342e-56AK358034.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1067G03.
GenBankAK3658412e-56AK365841.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038D02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843969.10.0PREDICTED: GATA transcription factor 2
SwissprotO497431e-64GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A022QX931e-179A0A022QX93_ERYGU; GATA transcription factor
STRINGMigut.B01577.1.p1e-180(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57761935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.15e-58GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]