PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.B01236.1.p | ||||||||
Common Name | LOC105957060, MIMGU_mgv1a008598mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 369aa MW: 40812.7 Da PI: 9.8622 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 50.8 | 4.4e-16 | 68 | 165 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..........rergferspkqCkekwenlnkrykkikegekkr..tsessstcpy 81 +W++ v L+ea++ +++ +r+klk+++W++v+k++ + ++++qCk+k+e+++kry+ + + + ++ + s++p+ Migut.B01236.1.p 68 EWSEGAVSSLLEAYEAKWTLRNRAKLKGQDWDDVAKHVscrggdggggGNNKSAKTQTQCKNKIESMKKRYRSESAAAAAAadAAAAASSWPL 160 5********************************************999999999999****************99988877435778899*** PP trihelix 82 fdqle 86 +++++ Migut.B01236.1.p 161 YSRMD 165 ***97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.6E-17 | 66 | 165 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 369 aa Download sequence Send to blast |
MERDHNHDHH NHKNQETPPQ PPPSLPPSYQ NPKEIIFTDQ SPRKHIITVA TNNNNTAAAT 60 NDRLKRDEWS EGAVSSLLEA YEAKWTLRNR AKLKGQDWDD VAKHVSCRGG DGGGGGNNKS 120 AKTQTQCKNK IESMKKRYRS ESAAAAAAAD AAAAASSWPL YSRMDLLLRG INNNGPPPVL 180 VVEPPPVEIP PPPSTAVAAV PLVAVEMGSV KQNSRGSDVG GGDRLAKGKG DGTNNGPKLT 240 NQEPEKNPII DDTDSSTPAI YTEREKPNKK VPIKSNKDYA KSNNKKRKRE DYNWEVGESI 300 RWFAEVMVRS EQARMETMRE IERMRIEAEA KRGEMELKRT EIIANTQLQI AKLFAKASVQ 360 DNNWKKPT* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.B01236.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012836432.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A022RD62 | 0.0 | A0A022RD62_ERYGU; Uncharacterized protein | ||||
STRING | Migut.B01236.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12251 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54390.1 | 3e-61 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.B01236.1.p |
Entrez Gene | 105957060 |