PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B01167.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 267aa    MW: 30982.6 Da    PI: 10.1736
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B01167.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.85.4e-2049139199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffkv    +   s r+++p +f+e++g k  ++  +tl+++sg s++  +  +k  +  +l+kGW+eFvk+n ++egDf++F++ g+s f  +
  Migut.B01167.1.p  49 FFKVY--VSEIYSERMRIPPDFIEKFGRK--KPAIVTLKTTSGISFRADM--NKINKCWYLEKGWSEFVKENSVEEGDFLTFSYAGKSVF--N 133
                       66666..55666789***********988..5669***************..666666789************************99999..9 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       vkvf k
  Migut.B01167.1.p 134 VKVFAK 139
                       999876 PP
2B342.89.1e-14176264595
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                        ++++  ++g+l +p kf + h+++ e+++  +    + +sW+v l      +r+++++GW +F+++n L++g  ++F+l++ s+  l v+
  Migut.B01167.1.p 176 VITESCVRRGWLHVPSKFWKGHMKIDEKGIRSVTLWIKKKSWDVGL--ATLFNRVIFSRGWIKFARDNSLRDGNLCTFRLINGSDSALSVT 264
                       678899999*************77778887777788999*******..999999**************************98777666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-2442142IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-2343142IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.99947140IPR003340B3 DNA binding domain
CDDcd100173.35E-1647137No hitNo description
SMARTSM010192.7E-1849140IPR003340B3 DNA binding domain
PfamPF023621.1E-1749139IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-17169265IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-17169257IPR015300DNA-binding pseudobarrel domain
CDDcd100174.57E-14171265No hitNo description
PROSITE profilePS5086312.012172266IPR003340B3 DNA binding domain
SMARTSM010191.8E-4173264IPR003340B3 DNA binding domain
PfamPF023622.2E-11176264IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MKRKKEKEEE EHKKMEKRGR GRPKKIKIAP QSHNLDEITV NSDDNLPEFF KVYVSEIYSE  60
RMRIPPDFIE KFGRKKPAIV TLKTTSGISF RADMNKINKC WYLEKGWSEF VKENSVEEGD  120
FLTFSYAGKS VFNVKVFAKN GCIKTVDNLE EDEPSEPENR NDNRKPIYEN RSFAAVITES  180
CVRRGWLHVP SKFWKGHMKI DEKGIRSVTL WIKKKSWDVG LATLFNRVIF SRGWIKFARD  240
NSLRDGNLCT FRLINGSDSA LSVTIK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B01167.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849940.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A022QSB22e-87A0A022QSB2_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126331320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.19e-17B3 family protein