PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.B00946.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YB

Protein Properties

Length: 195aa MW: 21590.6 Da PI: 4.5607

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.B00946.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	137.6	3.4e-43	29	121	2	94
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 re d ++P++n++r+++++lP +akis+dake++qecvsefisfvtsea++k++re +kti ++d++ a+a+lGf+dyvepl+++l+kyr + Migut.B00946.1.p 29 READLYMPMTNIVRVLHRTLPPHAKISDDAKEIIQECVSEFISFVTSEANEKAHREYKKTIHPEDVIAAMASLGFDDYVEPLRIFLNKYRAED 121 799***************************************************************************************866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.4E-41	27	125	IPR009072	Histone-fold
SuperFamily	SSF47113	1.55E-31	32	124	IPR009072	Histone-fold
Pfam	PF00808	1.6E-20	35	98	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.1E-17	62	80	No hit	No description
PRINTS	PR00615	1.1E-17	81	99	No hit	No description
PRINTS	PR00615	1.1E-17	100	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
TINPEAVSPN LSTTNVGEHN PAPPEDFRRE ADLYMPMTNI VRVLHRTLPP HAKISDDAKE 60 IIQECVSEFI SFVTSEANEK AHREYKKTIH PEDVIAAMAS LGFDDYVEPL RIFLNKYRAE 120 DPERGTSMQV QLPMAMRSGI QQPAAAPVAP PVPAPPPAPL VVMGNGAVIV DDEEVKPDEY 180 IGFDEVIRKY FLKD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	7e-40	29	118	7	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.B00946.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012857869.1	1e-114	PREDICTED: nuclear transcription factor Y subunit B-9-like
TrEMBL	A0A022RU63	4e-95	A0A022RU63_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.B00946.1.p	1e-140	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6044	4	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	5e-44	NF-YB family protein

Link Out ? help Back to Top
Phytozome	Migut.B00946.1.p