PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B00920.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | G2-like | ||||||||
Protein Properties | Length: 195aa MW: 22101.4 Da PI: 9.7803 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 46.6 | 7.6e-15 | 34 | 64 | 25 | 55 |
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kAtPk++l+lm++kgL l+h+kSHLQkYRl Migut.B00920.1.p 34 TKATPKSVLRLMGLKGLPLYHLKSHLQKYRL 64 59****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-13 | 34 | 66 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-8 | 35 | 65 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 3.0E-20 | 112 | 157 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MLGLKNNPVS EDFIIAGAAH IYLKLRFKIH IIFTKATPKS VLRLMGLKGL PLYHLKSHLQ 60 KYRLGQQQEA KKQNVLDHNT ENSGDSYGHH NMRIASTSAN SSSMNSEQGD IPIAEALRCQ 120 IEVQKTLQQQ LEVQKKLQMR IEVEGKYMQS ILEKTQHSLS PDINQSENLE LTKSQLTDFN 180 LALSNFMQTK RETI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B00920.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012854303.1 | 8e-90 | PREDICTED: myb family transcription factor APL | ||||
Swissprot | C0SVS4 | 3e-48 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A022RVE6 | 1e-117 | A0A022RVE6_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4416 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 1e-36 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.B00920.1.p |
Publications ? help Back to Top | |||
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