PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B00901.1.p | ||||||||
Common Name | LOC105978154, MIMGU_mgv1a019503mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | C2H2 | ||||||||
Protein Properties | Length: 258aa MW: 27374 Da PI: 10.1675 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00034 | 191 | 213 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k+F++ L H r+H Migut.B00901.1.p 191 HECETCQKTFTSGQALGGHKRMH 213 78******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.1E-4 | 136 | 151 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.55E-6 | 188 | 215 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-4 | 189 | 213 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 4.2E-10 | 191 | 215 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.325 | 191 | 213 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 193 | 213 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MALDRSLNSA PPLKNARHFD FLDLPSSSAV VGSWKKSSRR SKRRWQIKLG EDELSAARLV 60 MLARTGGGPY PSPPAAAAAS PSTEESKHDG DNPVCPVPII SAAASLHVKI SQESVPTTPS 120 PPPAVPKSYR RCADSGKGFN SYQALGGHKA SCCLKPTTAA AIDRNPYAVI PAVATASTRC 180 TSGMNRSGKI HECETCQKTF TSGQALGGHK RMHYEGVIGA RSKKSRKTSS NGGAATQKMI 240 RDFDLNLPPL PDQDFEF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B00901.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012859026.1 | 0.0 | PREDICTED: zinc finger protein ZAT6-like | ||||
TrEMBL | A0A022PYP2 | 0.0 | A0A022PYP2_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15005 | 2 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19580.2 | 3e-18 | zinc-finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Migut.B00901.1.p |
Entrez Gene | 105978154 |