PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.B00731.1.p

Common Name

LOC105960597, MIMGU_mgv1a026301mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

FAR1

Protein Properties

Length: 685aa MW: 78098.9 Da PI: 8.2156

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.B00731.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.6	2.3e-19	63	156	2	90
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHel 89 Y e+Ak+ GFs+r+++++ + + t+r fvC + g++ + ++++k +r+r+++r+gC+a ++++k+ ++w++t + ++HnH+l Migut.B00731.1.p 63 LYTEFAKRNGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPAKASSENKPQRNRKSSRCGCQAYMRISKSCelggVAEWRITGFANHHNHDL 155 7***********9998877356667999**********99999***************99876766789**********99 PP FAR1 90 a 90 Migut.B00731.1.p 156 L 156 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-16	63	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-20	279	370	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.347	555	591	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.6E-7	561	589	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.2E-6	566	593	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence Send to blast
MSEEVGMMLV YDDPSDQRSM SLDETSSTED SPNGTHLSLE LTNETTTPYI GQRFPTHDAA 60 YELYTEFAKR NGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPAKASSE NKPQRNRKSS 120 RCGCQAYMRI SKSCELGGVA EWRITGFANH HNHDLLEANQ VRFLPAYRTI TESDKNRILM 180 FAKTGISVQQ MMRLLELEKC VEPGYLPFTE KDVRNLLQSF RKVDPEDESV DLLRMCRSIK 240 DKDPSFKFEF TLDGNGRLEN IAWSYASSVQ SYEIFGDAVV FDTTHRLTAF DMPLGIWVGM 300 NNYGMPCFFG CVLLREENLR SFSWALKAFT TFMNGKAPQT ILTDQNMCLK DAIGMEMPTT 360 KHALCIWLIV AKFPSWFNAV LGERYNDWKT EFYRLYNLET IDDFELGWRD MVNSFGLHTN 420 RHIASLYALR NLWALPFLRS HFFAGMTTPS HSKSINAFIQ RFLSAQTRLA HFLEQVAVAV 480 DFKDQAGEQQ TMQQNIQNIS LKTGAPMESH ASSVLTPFAF SKLQEQLVMA AHYASYQMDG 540 GDFLVRHHTK LEGGRKVYWA PREGIISCSC HQFEFSGILC RHALRVLSTG NCFQIPERYL 600 LLRWRRISLP PGGRQPQTAP RSDQTDRVQL LQSMVTSLVA ESAKSKERMD FATEQVSIIL 660 SRVREQPVSN LGLRELSSTH RSLA*

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence Send to blast

MSEEVGMMLV YDDPSDQRSM SLDETSSTED SPNGTHLSLE LTNETTTPYI GQRFPTHDAA  60
YELYTEFAKR NGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPAKASSE NKPQRNRKSS  120
RCGCQAYMRI SKSCELGGVA EWRITGFANH HNHDLLEANQ VRFLPAYRTI TESDKNRILM  180
FAKTGISVQQ MMRLLELEKC VEPGYLPFTE KDVRNLLQSF RKVDPEDESV DLLRMCRSIK  240
DKDPSFKFEF TLDGNGRLEN IAWSYASSVQ SYEIFGDAVV FDTTHRLTAF DMPLGIWVGM  300
NNYGMPCFFG CVLLREENLR SFSWALKAFT TFMNGKAPQT ILTDQNMCLK DAIGMEMPTT  360
KHALCIWLIV AKFPSWFNAV LGERYNDWKT EFYRLYNLET IDDFELGWRD MVNSFGLHTN  420
RHIASLYALR NLWALPFLRS HFFAGMTTPS HSKSINAFIQ RFLSAQTRLA HFLEQVAVAV  480
DFKDQAGEQQ TMQQNIQNIS LKTGAPMESH ASSVLTPFAF SKLQEQLVMA AHYASYQMDG  540
GDFLVRHHTK LEGGRKVYWA PREGIISCSC HQFEFSGILC RHALRVLSTG NCFQIPERYL  600
LLRWRRISLP PGGRQPQTAP RSDQTDRVQL LQSMVTSLVA ESAKSKERMD FATEQVSIIL  660
SRVREQPVSN LGLRELSSTH RSLA*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.B00731.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012840240.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Refseq	XP_012840241.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A022R4W6	0.0	A0A022R4W6_ERYGU; Uncharacterized protein
STRING	Migut.B00731.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10896	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Migut.B00731.1.p
Entrez Gene	105960597

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]