PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.B00650.1.p | ||||||||
Common Name | MIMGU_mgv1a008487mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 373aa MW: 42759.1 Da PI: 9.523 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 63.4 | 5e-20 | 109 | 204 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 rWt+++v++Li++ +++ e + ++ +k++W+++s+ m erg+ +sp+qC++k+++lnk+yk++ + +++ +++++++ + Migut.B00650.1.p 109 RWTDDMVKVLIKVASYIAEIASPDCtdgetnplltPIKGKWRSISNIMVERGYIVSPQQCEDKFNDLNKKYKRLSDLLGGHaSCTVVENPLLM 201 8**************999999988777778888889*******************************************99678888777666 PP trihelix 83 dql 85 +++ Migut.B00650.1.p 202 ESM 204 666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.6E-15 | 109 | 193 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 373 aa Download sequence Send to blast |
MQVNHRQAPA PAPTPTPRPT RALTPYSYAN TSFNQHQFLN TLAFGAHTVQ HFHQPVMFLG 60 GKTNEGGMKN FAPKSQLKSQ PKIQHSAGRS GQSGVLSETG TEQVWQRIRW TDDMVKVLIK 120 VASYIAEIAS PDCTDGETNP LLTPIKGKWR SISNIMVERG YIVSPQQCED KFNDLNKKYK 180 RLSDLLGGHA SCTVVENPLL MESMNIPEDS KEEIRKILTC KQLFYREMYS YHNKSTRFLP 240 HDPPLQQLVR STLKGKVKYE SSQSQSLTLD MPAKRQKHGE GNCVINVVPE GIEGKKSEWV 300 VPWSVGLADK KLRMHNEMME LEKMKFEWVK VCQEEDKELE RLKLENELIK IENERLEFQI 360 MCRRQRGNAR RY* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.B00650.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012828285.1 | 0.0 | PREDICTED: uncharacterized protein LOC105949530 | ||||
TrEMBL | A0A022PUN5 | 0.0 | A0A022PUN5_ERYGU; Uncharacterized protein | ||||
STRING | Migut.B00650.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12585 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76870.1 | 6e-49 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.B00650.1.p |