PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00333.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 323aa    MW: 36897.8 Da    PI: 7.3409
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00333.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.4e-14150239198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k ++ps+v++  +l lpkkf++ +  +  e++ ++l de gr+ +  +   +++    l++GW+ F   ++L  gD ++F l++  +f  +
  Migut.B00333.1.p 150 FVKCMLPSNVSQGFWLHLPKKFCTVNLPN--EDTPVVLVDELGREHTTSYLLGRNG----LSAGWRAFSMKHKLLKGDLLIFLLTEPCKF--K 234
                       89*********************777433..5567***************666666....9**********************9877777..8 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v+++r
  Migut.B00333.1.p 235 VHIVR 239
                       88876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.45E-21145241IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-18147239IPR015300DNA-binding pseudobarrel domain
CDDcd100172.90E-22148239No hitNo description
PROSITE profilePS5086311.575150241IPR003340B3 DNA binding domain
SMARTSM010191.8E-14150241IPR003340B3 DNA binding domain
PfamPF023628.1E-12150239IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MYAQGNVSKK VLLTIAKEIE DRRTSTVMKT NDEEKLKGKL HETQYCTSDS DSDFCPEDPT  60
TSSSQERNKR KRKERTKMQF ESTSMGVSAK SERLKSDKEV CSDNSKKPQS ERKRTRDCDI  120
YEDEEAKRSV MQRAAELLAR LEQEYNLPSF VKCMLPSNVS QGFWLHLPKK FCTVNLPNED  180
TPVVLVDELG REHTTSYLLG RNGLSAGWRA FSMKHKLLKG DLLIFLLTEP CKFKVHIVRV  240
NDIEVLFAAL CLMDLRFSCE GNDSDSEKKD TRKRRRRNYV DPALFEMLMP SEKVEERDVP  300
KSSSSNSDGF SSEVIEGSES TD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271275RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00333.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836954.10.0PREDICTED: B3 domain-containing protein At3g19184-like
TrEMBLA0A022RBQ61e-108A0A022RBQ6_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-25B3 family protein