PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B00294.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | B3 | ||||||||
Protein Properties | Length: 220aa MW: 25071.6 Da PI: 9.6566 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.6 | 1.5e-15 | 16 | 106 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffk+++p++ ++ l++p +f e+ + + +s + tl +++ Wev+l + +g +++ +GW eFvk + L D++vFk++g+s+f Migut.B00294.1.p 16 FFKIMLPPNFTR---LRIPHDFNEQLSDI--NSNQATLASRTCGNWEVELV-KDDKGDIYFIRGWPEFVKHHSLVPLDILVFKYNGDSSF--D 100 788887777664...67******999666..45679**************5.44444566777***********************9999..8 PP EEEE-S CS B3 94 vkvfrk 99 v +f+k Migut.B00294.1.p 101 VVIFDK 106 988887 PP | |||||||
2 | B3 | 54.3 | 2.4e-17 | 126 | 219 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k++ +s+ ++++++ +pkkfa++h + +++ +tl++++g s + +i+ ++ + +t+GWkeF + n +k gD+++F+l++ +++ Migut.B00294.1.p 126 FEKKMQSSNIGSKSLVQIPKKFATAHlPH---SKQRITLRNSDGVSSSASIIIfSR--KYLAITGGWKEFSDFNSIKKGDICTFELID--QTT 211 89***99*******************533...3457********999999954233..34789**********************997..777 PP .EEEEE-S CS B3 92 lvvkvfrk 99 + v++frk Migut.B00294.1.p 212 MQVHIFRK 219 89***996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-20 | 11 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-20 | 11 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.605 | 13 | 107 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.39E-14 | 14 | 105 | No hit | No description |
Pfam | PF02362 | 2.7E-13 | 16 | 106 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-13 | 16 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-23 | 118 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.94E-22 | 120 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.55E-17 | 124 | 218 | No hit | No description |
PROSITE profile | PS50863 | 13.296 | 126 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-15 | 126 | 219 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-11 | 126 | 219 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MLGKNEIGSP DRRPCFFKIM LPPNFTRLRI PHDFNEQLSD INSNQATLAS RTCGNWEVEL 60 VKDDKGDIYF IRGWPEFVKH HSLVPLDILV FKYNGDSSFD VVIFDKNGTV RNYHHHQESA 120 SSFPSFEKKM QSSNIGSKSL VQIPKKFATA HLPHSKQRIT LRNSDGVSSS ASIIIFSRKY 180 LAITGGWKEF SDFNSIKKGD ICTFELIDQT TMQVHIFRK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B00294.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012836988.1 | 1e-163 | PREDICTED: B3 domain-containing protein Os11g0197600-like | ||||
TrEMBL | A0A022RFQ0 | 1e-122 | A0A022RFQ0_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3779 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 8e-15 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.B00294.1.p |