PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.A01161.1.p | ||||||||
Common Name | LOC105948642, MIMGU_mgv1a013016mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 26424.5 Da PI: 5.0713 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.5e-19 | 113 | 163 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +g r++lg+f ta eAa+a+++a+ +++g Migut.A01161.1.p 113 HYRGVRRRP-WGKYAAEIRDPARRG--SRVWLGTFETAAEAARAYDRAAFEMRG 163 7********.**********95443..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-32 | 112 | 172 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-23 | 113 | 173 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-36 | 113 | 177 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.1E-14 | 113 | 163 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.724 | 113 | 171 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.34E-29 | 113 | 171 | No hit | No description |
PRINTS | PR00367 | 6.1E-11 | 114 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-11 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGNPDELVSA IDRIKMHLLG ELSPRDIGST TTSFFSSGSD YYLSDPGFSV SDYSVDYQQN 60 NPFLPVIDLT TPRSKPSLRI ELPAAVNKFE WIDFQESSQA ANPVVEEEQP QRHYRGVRRR 120 PWGKYAAEIR DPARRGSRVW LGTFETAAEA ARAYDRAAFE MRGSKAILNF PLEIQREECE 180 RRAAAEVGGK RRRDEEEEVA EISRPKMVKC DSEWAPLTPS FWQLSPYGAI LSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-30 | 112 | 178 | 4 | 70 | ATERF1 |
3gcc_A | 1e-30 | 112 | 178 | 4 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00437 | DAP | Transfer from AT4G17490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.A01161.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012827321.1 | 1e-172 | PREDICTED: ethylene-responsive transcription factor 6-like | ||||
Swissprot | O80341 | 4e-42 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
Swissprot | Q8VZ91 | 3e-42 | EF103_ARATH; Ethylene-responsive transcription factor 6 | ||||
TrEMBL | A0A022PYF6 | 1e-170 | A0A022PYF6_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA963 | 23 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 3e-30 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Migut.A01161.1.p |
Entrez Gene | 105948642 |
Publications ? help Back to Top | |||
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