PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.A00165.1.p
Common NameLOC105977151, MIMGU_mgv1a008351mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 376aa    MW: 41896 Da    PI: 7.3741
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.A00165.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.6e-08136157426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       + C++f++ G C +Gd+C +aHg
  Migut.A00165.1.p 136 SACPDFRK-GACVRGDTCEYAHG 157
                       67******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.5E-4132158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.371133159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5136159IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-5136157IPR000571Zinc finger, CCCH-type
SMARTSM0035629167190IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MMMIGDPHRS NPTVQIPYWD YQRTEDPTAH IHSPITHNVS TNSPDGYHHY EKALAALQRY  60
LPSNQDDDVV VQADDEDSDN FDFPVDAFSC DNFRMFEFKV KKCARARSHD WTECPFAHPG  120
EKARRRDPRK YHYSGSACPD FRKGACVRGD TCEYAHGVFE CWLHPARYRT QPCKDGTHCR  180
RHVCFFAHTP DQLRVLPYNS SPDASPARTG HDPFILVGSS PKSTLYSPPS SPTTASPPVS  240
PGGSLRLSQL TESMRGLQLK KMKMGLGMGM GLSLSPPSWG LGYGSPRSPS AVRPGFMSLP  300
STPIRAVPRP GYSAFDTNWG TSYEEEPVME RVESGRALRE IIYAKLGREN SLGRVDRVDP  360
ADTVPDVGWV SDMLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.A00165.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012857882.10.0PREDICTED: zinc finger CCCH domain-containing protein 23
SwissprotO821991e-112C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A022PX600.0A0A022PX60_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-100C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]