PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.S062500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 248aa MW: 28403.7 Da PI: 6.9623 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.7 | 2.1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde+l +v ++G +W++ ++ g+ R++k+c++rw +yl Manes.S062500.1.p 14 RGAWSPEEDEKLRAYVLRYGHWNWRKLPKFAGLSRCGKSCRLRWMNYL 61 89******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 43.2 | 9.4e-14 | 68 | 112 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+ +++Ed+l+ + ++ G++ W++Ia++++ gRt++++k++w+++l Manes.S062500.1.p 68 GSYSQQEDDLIMKWHQDVGNK-WSLIAAKLQ-GRTDNEIKNYWHSHL 112 6789*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.621 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.4E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-9 | 16 | 61 | No hit | No description |
SMART | SM00717 | 1.5E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.266 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.5E-13 | 68 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 69 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.89E-8 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MVRAPFFDKS GLKRGAWSPE EDEKLRAYVL RYGHWNWRKL PKFAGLSRCG KSCRLRWMNY 60 LRPGVKHGSY SQQEDDLIMK WHQDVGNKWS LIAAKLQGRT DNEIKNYWHS HLKKIAKNKQ 120 NASGLKKVAS ETSQSDAREN AETHEAQVFF PNSPSHLILE SSPLSPETYS GKFSPITSDS 180 AHVTPQDQSW SAESFRSFEE SLGDFWTEPF VADSTYNQDV GFMPLSVFDY DDNVELLYQV 240 MQELPGN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-22 | 12 | 114 | 5 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.S062500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021602729.1 | 0.0 | transcription factor MYB15-like | ||||
TrEMBL | A0A199UAQ1 | 0.0 | A0A199UAQ1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023710m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 9e-57 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Manes.S062500.1.p |