PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S048300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 315aa    MW: 35554.5 Da    PI: 6.9482
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S048300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-183683148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT +Ed llv++++++G g+W++ a++ g++Rt+k+c++rw++yl
  Manes.S048300.1.p 36 RGPWTLDEDNLLVHCIARHGEGRWNLLAKRAGLRRTGKSCRLRWLNYL 83
                       89********************************************97 PP
2Myb_DNA-binding537.7e-1789132146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ T++E++l++d++ ++G++ W++Iar+++ gRt++++k++w++
  Manes.S048300.1.p  89 RGNLTPQEQLLILDLHSKWGNR-WSKIARYLP-GRTDNEIKNYWRT 132
                        7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.2783183IPR017930Myb domain
SuperFamilySSF466891.87E-3034130IPR009057Homeodomain-like
SMARTSM007171.0E-153585IPR001005SANT/Myb domain
PfamPF002493.1E-173683IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-223790IPR009057Homeodomain-like
CDDcd001676.53E-123883No hitNo description
PROSITE profilePS5129424.96684138IPR017930Myb domain
SMARTSM007176.7E-1588136IPR001005SANT/Myb domain
PfamPF002495.1E-1589132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-2391137IPR009057Homeodomain-like
CDDcd001672.99E-1193132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MRVVANMPSS SSPPPPSLSK KSSNDDHNDH SDQLRRGPWT LDEDNLLVHC IARHGEGRWN  60
LLAKRAGLRR TGKSCRLRWL NYLKPDVKRG NLTPQEQLLI LDLHSKWGNR WSKIARYLPG  120
RTDNEIKNYW RTRVQKQAKN LKIDANSSAF QEIIRYVWIP RLLQKIEGSS TSSSPSSSLS  180
TYPTVSDQPV NCSAPDLPPP PPPQQEVSGH HQGHVDHNSD SEHGSNSCIS STESMNRSQI  240
SELSEYPASP FHSMCTFQKD SFYVDNLDTM TLATLSVTEG GFQNSTCEPH VSESNWVEYD  300
FGDNMWNMDE FMAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25341385108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S048300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ1782401e-153JQ178240.1 Hevea brasiliensis cultivar CATAS7-33-97 myb domain protein (MYB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602556.10.0transcription factor MYB78-like
TrEMBLA0A199UAV10.0A0A199UAV1_MANES; Uncharacterized protein
STRINGcassava4.1_012213m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-73myb domain protein 62