PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S044100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 409aa    MW: 46538 Da    PI: 6.0655
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S044100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.9e-35131051102
                        HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
       HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                        +Fl+k+ye+++d+++++++sws++++sf+v+++ efa+++Lpk+Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +
  Manes.S044100.1.p  13 SFLSKTYEMVDDPSTDSVVSWSQSNKSFIVWNPPEFARDLLPKFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANEDFIRGQPH 95 
                        59***************************************************************9998.........************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  93 llekikrkks 102
                        l++ki+r+k 
  Manes.S044100.1.p  96 LMKKIHRRKP 105
                        *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-38598IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.4E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDKSQGSSNS LPSFLSKTYE MVDDPSTDSV VSWSQSNKSF IVWNPPEFAR DLLPKFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANEDFI RGQPHLMKKI HRRKPVHSHS VQNENIHGRG  120
SNPLTDSERQ SLKVYIERLE EEKKVLILEL QRHEQERQGF EMQVQALKVK LQQMEKRQQT  180
LVSCMAQVLQ KPGLAINLMS QLEPGHDRKR RLPRIGYFSN EASIEDNHMV TCQTHAGENA  240
DSNSVAQTNM EQFEQLESSL TFWESILNDV QINAQINSTL ELDESTSCAE SPAVSCVQFI  300
VDVRPKSPSI DMNSEPAVAS ATDSVPPREH APGPAPSAAA GVNDVFWEQF LTENPGSTDK  360
QEVQYERKDS GGRKHEIKPS DQGQFWWNMR NVNNIAKQMG HLTPAERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-24410320129Heat shock factor protein 1
5d5v_B1e-24410320129Heat shock factor protein 1
5d5v_D1e-24410320129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S044100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602517.10.0heat stress transcription factor A-4a-like
SwissprotO494031e-135HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A199UBD40.0A0A199UBD4_MANES; Uncharacterized protein
STRINGcassava4.1_034415m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-128heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]