PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S020000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 324aa    MW: 36590.8 Da    PI: 7.4792
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S020000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.4e-12186211126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        y   +C+++ +tG+C yGd CkF+H+
  Manes.S020000.1.p 186 YQPDICKDYKETGYCGYGDACKFMHD 211
                        67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.49E-9184217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577185213IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7185212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12186216IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-10186211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.9E-13250304IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578505.71E-13262305No hitNo description
PfamPF139201.4E-8262304No hitNo description
PROSITE profilePS5008910.409263301IPR001841Zinc finger, RING-type
CDDcd001623.61E-8263304No hitNo description
SMARTSM001841.8E-4263300IPR001841Zinc finger, RING-type
PROSITE patternPS005180278287IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MADSGESQQP EPVCNFFRKP LKNKNIRKRT VEEDEDEDSK SGSSLLQIQK KVPKLDNKLF  60
FSTGPSKSSM STESTVESNR SVFQFESSKE IQVQHDSRAT STLETETEFS KDARAIRERA  120
LKQAEEALKG KNPSSGNEKV YKGIHRYTDH KAGFRREQTI SSEKAGGAHG PLRASAHIRV  180
SARFDYQPDI CKDYKETGYC GYGDACKFMH DRGDYKPGWQ LEKEWEEAEK IRKRNLALGE  240
DGGGSIEQSD EDEDDDDSLP FACFICRQPF VDPVVTKCKH YFCEHCALKH HAKNKKCFVC  300
NQPTLGIFNA AHEIRKKMAA EGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-6396318113317RING finger protein 113A
5z58_M4e-6396318113317RING finger protein 113A
6ff4_t4e-6396318113317RING finger protein 113A
6ff7_t4e-6396318113317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S020000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602202.10.0zinc finger CCCH domain-containing protein 1-like
RefseqXP_021602204.10.0zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-173C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A199UC170.0A0A199UC17_MANES; Uncharacterized protein
STRINGcassava4.1_027613m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-167C3H family protein