PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.18G089100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Dof

Protein Properties

Length: 254aa MW: 28447.6 Da PI: 4.7065

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.18G089100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.7	3.9e-36	13	69	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC s++tkfCyynnyslsqPry Ck CrryWtkGG+lrnvPvGgg+rk +++ Manes.18G089100.1.p 13 PNCPRCASSKTKFCYYNNYSLSQPRYICKDCRRYWTKGGSLRNVPVGGGCRKTSRAK 69 58**************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	1	67	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.559	13	67	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-31	13	67	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	15	51	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MEKTWKSHVE LAPNCPRCAS SKTKFCYYNN YSLSQPRYIC KDCRRYWTKG GSLRNVPVGG 60 GCRKTSRAKS LRVSQDGHRT AFAKSFSGLS DRSNESRGEY SLAQETATTN GSSEIDLAVV 120 FANFLNQDSS FQPEYMAMGQ ELPNDQACTQ ANSLTPDSAV IECDDKLTDL LIQECDSFLE 180 GQCLPPTIVR DHQQQERIQE LIESHEMVQD YSSLWSEAAA TLSNATWETV VQPQEEFISS 240 FSMDDELKIS LIK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.18G089100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021600275.1	0.0	uncharacterized protein LOC110605904
TrEMBL	A0A2C9U1I6	0.0	A0A2C9U1I6_MANES; Uncharacterized protein
STRING	cassava4.1_023827m	1e-172	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	4e-39	Dof family protein

Link Out ? help Back to Top
Phytozome	Manes.18G089100.1.p