PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G085700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 353aa    MW: 40832.5 Da    PI: 8.4697
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G085700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.3e-1757102147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ede+l ++v+q+G  +W++Ia+++  gR++k+c++rw++ 
  Manes.18G085700.1.p  57 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLE-GRSGKSCRLRWFNQ 102
                          899*****************************.***********996 PP
2Myb_DNA-binding58.71.3e-18109152146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  Manes.18G085700.1.p 109 RRPFTEEEEERLLAAHRFHGNK-WALIARLFP-GRTDNAVKNHWHV 152
                          679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.68652103IPR017930Myb domain
SuperFamilySSF466891.83E-2956150IPR009057Homeodomain-like
SMARTSM007171.1E-1456105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2758110IPR009057Homeodomain-like
PfamPF139212.8E-1760120No hitNo description
CDDcd001671.51E-1360101No hitNo description
PROSITE profilePS5129427.2104158IPR017930Myb domain
SMARTSM007178.7E-16108156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-21111157IPR009057Homeodomain-like
CDDcd001676.61E-7120151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MLLYIFFSTS LMVYFDDQEF KDKGCQHRMY CWHFSIMDEP GASSSYDDAK NSLTCPRGHW  60
RPAEDEKLRQ LVEQYGAQNW NSIAEKLEGR SGKSCRLRWF NQLDPRINRR PFTEEEEERL  120
LAAHRFHGNK WALIARLFPG RTDNAVKNHW HVIMARKQRE QSKLSGKRSY HEGLRESNSS  180
TPDDFHPSKS RSEDPFSSRI GFENSTRVLE FRNPTADSWT FAPSNCSYSV ADHLSPRKEG  240
IDFFNNSSFY TTQNSKISDH QSIYRCYPNS SMCRSSTVVG LPNYKRVVLR PFGCLNFEED  300
RENHGMIKKD LASFCYSSSA FKKNNQAEQG DQGSVRHKEV QFIDFLGVGI SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-32571577107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G085700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346301e-64KM034630.1 Jatropha curcas clone JcMYB009 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601817.10.0transcriptional activator Myb-like
TrEMBLA0A2C9U3960.0A0A2C9U396_MANES; Uncharacterized protein
STRINGcassava4.1_022587m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.19e-64myb domain protein 52