PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G075300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 499aa    MW: 54950.9 Da    PI: 6.199
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G075300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS332.48.5e-1021044881374
                 GRAS   1 lvelLlecAeavssgdle..laqalLarlsel.aspdgdpmqRlaayfteALaarlar.....svselykalppsetsekn...sseela 79 
                          lv+lL+++Aea++  +++  la+ +L rl+el + +dg++m+Rlaayft AL+  l +     ++++l +  p  + ++++   ++++la
  Manes.18G075300.1.p 104 LVHLLMAAAEALTGVNKSrdLARVILIRLKELvSHNDGTNMERLAAYFTDALQGLLEGagggsHGKHLINNGPYHHHHRDDhhhQADVLA 193
                          68***********96665559***********444566******************97321113455666665555555547889999** PP

                 GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerL 165
                          a++l++++sP++kf+h+taNqaIleav++++r+Hi+D+di++G+QW++L+q+LasR++gpp  +lRiT+++++ sg  s  +++etg+rL
  Manes.18G075300.1.p 194 AFQLLQDMSPYVKFGHFTANQAILEAVAQDKRIHIVDYDIMEGIQWASLMQSLASRKDGPPtpHLRITALSRSGSGrrSIGTVQETGRRL 283
                          *********************************************************776556*********888899999********* PP

                 GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFl 254
                            fA+++g pf+f+    ++ e++++++L++ +gEal++n++l+l ++  +  ++     ++L+  k+l+P+++++ve+e+   +++ F+
  Manes.18G075300.1.p 284 VAFAASIGQPFSFHQCRLDSDETFRPSALKLVRGEALVINCMLHLPHFSYRAPDSV---ASFLSGSKTLNPRLLTLVEEEVGPiGDGGFV 370
                          ***************9999****************************985555555...59*******************9988****** PP

                 GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                           rf+++l++ysa++dslea++p + ++r+ vEr++lg++i   +a   ++r  ++     W e+l++ GFk+v++s  + +qaklll  +
  Manes.18G075300.1.p 371 GRFMDSLHHYSAVYDSLEAGFPMQGRARALVERVFLGPRIAGSLARIYRARGDKE--GCCWVEWLGATGFKEVNISFANHCQAKLLLGLF 458
                          ************************************************9955444..578****************************** PP

                 GRAS 345 ksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                          + dgyrvee   + lvlgWk+r+L+s+S W+
  Manes.18G075300.1.p 459 N-DGYRVEEMgCNRLVLGWKSRRLLSASIWT 488
                          *.******98578999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.97678468IPR005202Transcription factor GRAS
PfamPF035142.9E-99104488IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MAIAIDGAFD ELDFSGYGSI STTTTPTTSA ENDHHACNWN DFSPVVDWEA LSCHHDDFHD  60
LIESMMEDGG FSQPICNSNS NSFSSDTMLV DEETNGEDFK GLRLVHLLMA AAEALTGVNK  120
SRDLARVILI RLKELVSHND GTNMERLAAY FTDALQGLLE GAGGGSHGKH LINNGPYHHH  180
HRDDHHHQAD VLAAFQLLQD MSPYVKFGHF TANQAILEAV AQDKRIHIVD YDIMEGIQWA  240
SLMQSLASRK DGPPTPHLRI TALSRSGSGR RSIGTVQETG RRLVAFAASI GQPFSFHQCR  300
LDSDETFRPS ALKLVRGEAL VINCMLHLPH FSYRAPDSVA SFLSGSKTLN PRLLTLVEEE  360
VGPIGDGGFV GRFMDSLHHY SAVYDSLEAG FPMQGRARAL VERVFLGPRI AGSLARIYRA  420
RGDKEGCCWV EWLGATGFKE VNISFANHCQ AKLLLGLFND GYRVEEMGCN RLVLGWKSRR  480
LLSASIWTSP SDSDLQII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-539749112382Protein SCARECROW
5b3h_A1e-539749111381Protein SCARECROW
5b3h_D1e-539749111381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G075300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601913.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2C9U1260.0A0A2C9U126_MANES; Uncharacterized protein
STRINGcassava4.1_027791m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-161GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]