PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.18G071700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bZIP

Protein Properties

Length: 332aa MW: 36835.2 Da PI: 6.4305

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.18G071700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.2	2.7e-11	74	114	2	42
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 +++k+ rr+++NReAArrsR+RKka++++Le +L + Manes.18G071700.1.p 74 PADKVLRRLAQNREAARRSRLRKKAYVQQLESSQLKLVQLE 114 689****************************8766666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.1E-8	69	121	No hit	No description
SMART	SM00338	5.5E-6	73	136	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.898	75	119	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.6E-8	75	117	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.02E-7	77	118	No hit	No description
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.0E-9	163	207	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MSSSSTQLSA LRGMGIYEPF HHLSSWGDPF RGDGSLNIDS SAIVQVDAGL NNKTEYVSQD 60 SMEPSRSDQE GNKPADKVLR RLAQNREAAR RSRLRKKAYV QQLESSQLKL VQLEQELERA 120 RQQGVYISSA PDSSHSGLPG ALNSGITTFE IEYGHWIEEH HKQISELRNA LQARITDIEL 180 RILVENGLNH YNNLFRMKAD AANADVLMSQ LEPLTDQQLV DVCNLRQSSQ QAEDALSQGI 240 DKLQQTLAQS IAADITSGGS YAAQMAAAVE KLEALEGFVN QADHLRQQTL QQMSRILTTR 300 QAARGLLALG EYFHRLRALS SLWAARPREP T*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	95	RRSRLRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.18G071700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021601207.1	0.0	LOW QUALITY PROTEIN: transcription factor TGA3
Swissprot	Q93ZE2	1e-133	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A2C9U1J3	0.0	A0A2C9U1J3_MANES; Uncharacterized protein
STRING	XP_002513852.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-119	bZIP family protein

Link Out ? help Back to Top
Phytozome	Manes.18G071700.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]