PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.18G063800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | HB-other | ||||||||
Protein Properties | Length: 218aa MW: 24987.6 Da PI: 4.8894 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.2 | 1.4e-08 | 57 | 99 | 3 | 45 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVk 45 k++++t eq+++Le+ Fe ++++ e++ +LA++lgL++rq+k Manes.18G063800.2.p 57 KKRRLTLEQVKALEKSFEVENKLEPEKKLKLAEELGLQQRQIK 99 56689************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-10 | 45 | 99 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.08E-8 | 49 | 99 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.151 | 52 | 112 | IPR001356 | Homeobox domain |
SMART | SM00389 | 0.0025 | 55 | 112 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.0E-6 | 57 | 99 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.03E-7 | 57 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MKRFSSSDSF AALVSISSSK EEKTQKSTQE YTREFQAMLD SLEEEGHSEE AIHATEKKRR 60 LTLEQVKALE KSFEVENKLE PEKKLKLAEE LGLQQRQIKE LKAKLREENA ESSHSVKEET 120 PVSESENNVS VHSQSHEFSD NNHSSPTIKD QSDCLPSHAL MNWIQLTESR TILGNGFQVY 180 QPHVVKIEEQ NLFNTEESCN FFSVDQAPTL YWHFPEQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.18G063800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021600536.1 | 1e-158 | homeobox-leucine zipper protein ATHB-6-like isoform X2 | ||||
TrEMBL | A0A2C9U143 | 1e-156 | A0A2C9U143_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_014014m | 1e-114 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 3e-09 | homeobox protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Manes.18G063800.2.p |