PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G050100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 405aa    MW: 43990.6 Da    PI: 5.7576
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G050100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.9e-10247295355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Manes.18G050100.1.p 247 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 295
                          58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.07E-11242299No hitNo description
SuperFamilySSF474596.8E-17242311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16245312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-7247295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MGSSGDNNDG MAFQNGGQSS GMTGNPFFAP AWDPVVSISQ HENFGGSSMV SQSEFTNSSY  60
PVVMENQGIS TTSHLVHYPS DSSYVEMVPK FPSYGSGSFS EMVSSFGLSE CSQIANTGCH  120
PNYSSNKEAV IGRTISNCTE SQEDHQLTEE PIIGASPDGK RRKRVAESSS PFDPNKNADG  180
ELQKDASGHS SDVQKEQDEK KPRTEQNTAA NLRGKQAAKQ PKDNSHSGEA PNENYIHVRA  240
RRGQATNSHS LAERVRREKI SERMRLLQEL VPGCNKITGK AVMLDEIINY VQSLQQQVEF  300
LSMKLATVNP ELSTDIERIL SKDILHSRGS NAAFMGFSPG MNAYPYSHGI FPANMPIIPN  360
TNPQYPPVPH AALDNDLQTL FQMGFDSSSA IDGLGPNGRL KPEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G050100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601621.10.0transcription factor bHLH74
TrEMBLA0A2C9U0J20.0A0A2C9U0J2_MANES; Uncharacterized protein
STRINGcassava4.1_008929m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.15e-93bHLH family protein