PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G025400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 326aa    MW: 37773.5 Da    PI: 9.3879
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G025400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.4e-19341101294
                          HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                            ++l +p +f+++   k   + t+tl+++sg +We+ l  + ++++ +++ GWkeFvk + L+e+D++vFk++g+s f   v
  Manes.18G025400.1.p  34 FDQCLAIPENFTRNLPRK--LPNTVTLKSPSGIKWEIGL--TANDNSLFFEHGWKEFVKYHSLEENDILVFKYNGESHF--DV 110
                          45669*******777544..888****************..********************************998888..44 PP
2B347.72.8e-15224318194
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE...E- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk...ld 85 
                          f+  ++p +v+++  +++p   +++h +   +e+++++l+  + ++W+ +l yr+k++r  +  +GW++Fv +n+L+e D++vF+   l 
  Manes.18G025400.1.p 224 FIVMMKPTHVSRKFFMSIPSAWMTKHiS--CRENQDVILRM-KENTWRTRLYYRRKPNRgGLACGGWRSFVLDNKLREFDVCVFEpgsL- 309
                          67789999******************63..33445677665.779******99999999655558********************4322. PP

                          SSSEE..EE CS
                   B3  86 grsefelvv 94 
                          ++++  l v
  Manes.18G025400.1.p 310 DNESVVLDV 318
                          224444555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-2121114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.39723116IPR003340B3 DNA binding domain
SMARTSM010199.1E-1526116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-2126114IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-1931114No hitNo description
PfamPF023628.5E-1734108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-18222322IPR015300DNA-binding pseudobarrel domain
CDDcd100177.38E-20224321No hitNo description
SMARTSM010196.3E-10224324IPR003340B3 DNA binding domain
PfamPF023622.5E-13224320IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-14224307IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.335224324IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEEGASRDCR SWNEEIYWTH FQYVHFSRFL HAGFDQCLAI PENFTRNLPR KLPNTVTLKS  60
PSGIKWEIGL TANDNSLFFE HGWKEFVKYH SLEENDILVF KYNGESHFDV LMFNGWSMCE  120
KTACYFLRKH GPKEHDSGCQ IKREIGKKSA GVVIGSCPKK KPKNKNIHTP IKQPVISKFA  180
KNVTAGNKEP CDEDIEAKPD IKHREKEIQC VLQLAHATLT DKGFIVMMKP THVSRKFFMS  240
IPSAWMTKHI SCRENQDVIL RMKENTWRTR LYYRRKPNRG GLACGGWRSF VLDNKLREFD  300
VCVFEPGSLD NESVVLDVKI FHVKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G025400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600589.10.0B3 domain-containing protein REM16-like
TrEMBLA0A2C9TZZ90.0A0A2C9TZZ9_MANES; Uncharacterized protein
STRINGcassava4.1_023093m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-67B3 family protein