PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G023700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ZF-HD
Protein Properties Length: 294aa    MW: 32753.5 Da    PI: 8.1558
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G023700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.31.5e-3277134260
          ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                          ++vrY+eCl+NhAas+Gg+++DGCgEfmp  geegt++alkCaAC+CHRnFHR+ev+ e
  Manes.18G023700.1.p  77 SNVRYRECLRNHAASVGGNVFDGCGEFMPG-GEEGTIEALKCAACDCHRNFHRKEVDGE 134
                          689**************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.7E-3078131IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-2479132IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.8E-2980131IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.6181130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.54E-18211282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-29220282IPR009057Homeodomain-like
TIGRFAMsTIGR015658.9E-29221278IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MELRAPEMND IRTSVPSSFS HQSSAVEKRR DGNHNGNSSL AYNQTLDQNR QSSLSQARSP  60
NPDRLSTISK GSNSKTSNVR YRECLRNHAA SVGGNVFDGC GEFMPGGEEG TIEALKCAAC  120
DCHRNFHRKE VDGETQFSPS SRRSPFVLQL PPPLPSPTVL HHQRYSMGLH TSPTTANMVQ  180
PMSVAFGGGG GGGTESSSED LNPFHSNAEG MPPPPPYVLS KKRFRTKFTQ EQKDKMMEFA  240
EKIGWRISKP EEEEVVKFCA EVGVRRQVFK VWMHNNKNMK KQQQEQQEEE EPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-232202781674ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G023700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600307.10.0zinc-finger homeodomain protein 5-like
SwissprotQ9ZPW76e-69ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A2C9U1G70.0A0A2C9U1G7_MANES; Uncharacterized protein
STRINGcassava4.1_024308m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.12e-68homeobox protein 33