PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.18G018200.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | SRS | ||||||||
Protein Properties | Length: 321aa MW: 35333.1 Da PI: 7.3715 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 226.3 | 5.8e-70 | 89 | 245 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..........aeaaskrkrelkskkq 83 g+++CqdCGnqakkdCah RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++ + +++kr re ++ + Manes.18G018200.3.p 89 GGMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQEQQQQQhnqeqqqlqfRGENPKRLRE-NQGGA 177 789****************************************************99988887755554443333333333333.34455 PP DUF702 84 salsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 s+l++t+l+ ++++ le++++P+ev+s+avfrcvrvs++d+ +e++aYqtav+igGhvf+G+LydqG++ Manes.18G018200.3.p 178 SSLACTRLA--TTTSGLEVAHFPPEVNSTAVFRCVRVSAMDEPDEQYAYQTAVNIGGHVFRGVLYDQGPD 245 556666655..55667999*************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.3E-67 | 90 | 245 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 9.1E-27 | 92 | 134 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 7.1E-26 | 196 | 244 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MAGWFYLSGR EGATSKQEEE KEQHNNLFLY RSNEEIYNKG FEIWPQYYQQ QQNMNSYSSF 60 GVGPSRRSFS DESSRSGFTV MRQGGIGGGG MNCQDCGNQA KKDCAHLRCR TCCKSRGFQC 120 QTHVKSTWVP AAKRRERQQQ LAALQQEQQQ QQHNQEQQQL QFRGENPKRL RENQGGASSL 180 ACTRLATTTS GLEVAHFPPE VNSTAVFRCV RVSAMDEPDE QYAYQTAVNI GGHVFRGVLY 240 DQGPDGRYTS GGESSSGGVQ QLNLITAATT SPAATTTNAS NPGTGALLDP SLYPAPLNAF 300 IAVVEHMDAC GVCFLSLLYF * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.18G018200.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP011966 | 0.0 | AP011966.1 Jatropha curcas DNA, clone: JHL18I08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021600799.1 | 0.0 | protein SHI RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_021600800.1 | 0.0 | protein SHI RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_021600801.1 | 0.0 | protein SHI RELATED SEQUENCE 5-like isoform X1 | ||||
Swissprot | Q9LQZ5 | 5e-90 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2C9U0K6 | 0.0 | A0A2C9U0K6_MANES; Uncharacterized protein | ||||
STRING | XP_002510471.1 | 1e-146 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 5e-68 | SHI-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Manes.18G018200.3.p |
Publications ? help Back to Top | |||
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