PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.18G002500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NAC

Protein Properties

Length: 330aa MW: 36948.8 Da PI: 7.5205

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.18G002500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105	9.4e-33	2	77	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+ +g+l g+kktLvfykgrap+gekt+Wvmheyrl Manes.18G002500.1.p 2 GDREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSAsTGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 77 578***********************************9878889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	42.786	1	99	IPR003441	NAC domain
SuperFamily	SSF101941	1.96E-38	2	99	IPR003441	NAC domain
Pfam	PF02365	3.4E-15	6	77	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MGDREWYFFS LRDRKYPTGL RTNRATGAGY WKATGKDREV YSASTGALLG MKKTLVFYKG 60 RAPRGEKTKW VMHEYRLDGD FSYRHTCKEE WVICRIFHKT GEKKNGLVHG QGFVLEVSSP 120 PISCSLPPLL EAPSTLVKCQ DQAPTEVLQN HFLIHHQEGD LKSLLLSSLV FQSNNIVSVN 180 ELFQPSFSAA SITKNTRETN KNVHTDTNTN GASPSMLFKS PVSHQDCTLK EQSNIPKQCK 240 TEANFSYFQL PDPNSNMNWV DKVHPSPCIQ YPLSCEMDCN VLGISAAATD SDITAYEMST 300 SIAFNGAGFQ MMMLDTPIRH PAESWQLDS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-31	1	99	68	165	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-31	1	99	68	165	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-31	1	99	68	165	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-31	1	99	68	165	NO APICAL MERISTEM PROTEIN
3swm_A	9e-31	1	99	71	168	NAC domain-containing protein 19
3swm_B	9e-31	1	99	71	168	NAC domain-containing protein 19
3swm_C	9e-31	1	99	71	168	NAC domain-containing protein 19
3swm_D	9e-31	1	99	71	168	NAC domain-containing protein 19
3swp_A	9e-31	1	99	71	168	NAC domain-containing protein 19
3swp_B	9e-31	1	99	71	168	NAC domain-containing protein 19
3swp_C	9e-31	1	99	71	168	NAC domain-containing protein 19
3swp_D	9e-31	1	99	71	168	NAC domain-containing protein 19
3ulx_A	1e-30	1	102	66	171	Stress-induced transcription factor NAC1
4dul_A	8e-31	1	99	68	165	NAC domain-containing protein 19
4dul_B	8e-31	1	99	68	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.18G002500.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR605188	0.0	KR605188.1 Manihot esculenta NAC transcription factors 50 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021600113.1	0.0	protein CUP-SHAPED COTYLEDON 3-like isoform X1
TrEMBL	A0A2C9U024	0.0	A0A2C9U024_MANES; Uncharacterized protein
STRING	cassava4.1_023225m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7888	33	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	9e-64	NAC family protein

Link Out ? help Back to Top
Phytozome	Manes.18G002500.1.p

Publications ? help Back to Top
Hu W, et al. Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava. PLoS ONE, 2015. 10(8): p. e0136993 [PMID:26317631]