PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.17G113200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 199aa MW: 22916.8 Da PI: 6.3612 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 5.9e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +l+++++ +G g W++ a+ g++Rt+k+c++rw++yl Manes.17G113200.1.p 15 KGPWTMEEDMILINYIANHGEGAWNSLAKAAGLKRTGKSCRLRWLNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.4e-17 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ Manes.17G113200.1.p 68 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 111 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-24 | 8 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.374 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.58E-31 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.31E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.316 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-25 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-16 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.17E-11 | 72 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0080086 | Biological Process | stamen filament development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MDKKPCISEE AEVRKGPWTM EEDMILINYI ANHGEGAWNS LAKAAGLKRT GKSCRLRWLN 60 YLRPDVRRGN ITPEEQLLIM ELHAKWGNRW SKIAKHLPGR TDNEIKNFWR TRIQKHIKQE 120 EAFSGQSSCE INEHPSTSLQ ASAMMETYSP SSYQESTMEA FPAETLAPDQ STDNYWSMED 180 LWSMQLFNGD YLINSRVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-26 | 12 | 117 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.17G113200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ497053 | 6e-99 | FJ497053.1 Populus x canadensis MYBF1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021598931.1 | 1e-148 | myb-related protein 305-like | ||||
Swissprot | P81391 | 1e-91 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A2C9U7Z4 | 1e-147 | A0A2C9U7Z4_MANES; Uncharacterized protein | ||||
STRING | evm.model.supercontig_186.7 | 1e-108 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3305 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 5e-92 | myb domain protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Manes.17G113200.1.p |
Publications ? help Back to Top | |||
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