PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G092200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 567aa    MW: 60992.8 Da    PI: 9.7767
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G092200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-056688123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C+ C+k F r  nL+ H r H
  Manes.17G092200.1.p 66 FICEVCNKGFQREQNLQLHRRGH 88
                         89*******************88 PP
2zf-C2H212.50.00043142164123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +t+
  Manes.17G092200.1.p 142 WKCEKCSKKYAVQSDWKAHSKTC 164
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.38E-76588No hitNo description
Gene3DG3DSA:3.30.160.606.3E-66588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00526688IPR015880Zinc finger, C2H2-like
PfamPF121712.8E-56688IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.996688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355150107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.1E-5130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.38E-7137162No hitNo description
SMARTSM00355140142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MAAASSSVSL FRSREENQNQ MMQQNSSTAA PTTAPQKKKR NQPGTPNPDA EVIALSPKTL  60
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKTTK EVKRKVYLCP EPTCVHHDPS  120
RALGDLTGIK KHYFRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  180
DSFITHRAFC DALAQESARH PTSLSTIGTH LYGNNNMGIG LSQVGSQISS LQDQNHPTSN  240
MLRLGSTGAA KFEHIIPPSN SSSLSTMPSS AFFMSDANQG SFPNKSLHGL MQLPDLQSST  300
DNSSTTNLFN LGFFPSNATA PNRMNDSDNA NSSTVTTNLV NSRFLNSNPF HNGNGGQGTT  360
TLFANNMGDH VGSAGISSLY SNSMQQENIT PHMSATALLQ KASQMGSTTS SNNPNLLRSL  420
GSSPSTGIKS DRSPLVSTNF GSNSFGDATV GEVGLGIQME SDNQLQGLMN SLANGGSSIF  480
GGGHGQDNSF GGFTSGGVSL EQHHNSTKFR NVEEAKLHQS LGVGSDKLTL DFLGVGGMVR  540
SIGGGQHGIN LSSLDSQSAQ ANNKRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34138199364Zinc finger protein JACKDAW
5b3h_F1e-34138199364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G092200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084941e-144AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599763.10.0protein indeterminate-domain 5, chloroplastic-like
SwissprotQ9ZUL31e-141IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A2C9U6M20.0A0A2C9U6M2_MANES; Uncharacterized protein
STRINGcassava4.1_004443m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-124indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]