PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G092100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 591aa    MW: 64374.2 Da    PI: 9.1354
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G092100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23.1e-057193123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C+ C+k F r  nL+ H r H
  Manes.17G092100.1.p 71 FICEVCNKGFQREQNLQLHRRGH 93
                         89*******************88 PP
2zf-C2H213.10.00028147169123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k++  +s+ k H +t+
  Manes.17G092100.1.p 147 WKCEKCSKRYAVQSDWKAHSKTC 169
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.6E-67093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.84E-77093No hitNo description
PROSITE profilePS5015710.997193IPR007087Zinc finger, C2H2
SMARTSM003550.00527193IPR015880Zinc finger, C2H2-like
PfamPF121712.9E-57193IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355130112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-5135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.84E-7142167No hitNo description
SMARTSM00355130147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MAASSSSVPF FGIRDEDHQN QIKQQHSSTP TSSTAPPPPP QKKKRNQPGT PNPDAEVIAL  60
SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKTTKEVKRK VYLCPEPTCV  120
HHDPSRALGD LTGIKKHYSR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAQ ESARNPPSTL NTIGSHLFVG SNMSLGLSQV GTQISSMQDQ  240
SSDILRLGGG GRSGQFDHLL PPSMGSSSFR TPQQMPSSAF FMQEPNQNYH EEHQSQQGLL  300
QNKSFHNGLM QFADLHNTTN NNPPPPASNL FNFSFMSSGS TGSNIVNSND ANNSNSNIPS  360
SGLLISNPFN TQNGTTGGGE GSGIFSNNIM GDHHHQMTSG VPPLFSSSVQ NDNMVPHMSA  420
TALLQKAAQM GSTSSTNSAS LLRSFGSSSS SGIKSDRPLV AANFGGIFNE NDNNLHDLMN  480
SFATGNSSLF VSGHGQENPY SGNMEEAKLH QGMNVSIGGS DRLTRDFLGV GQIVRSMSGG  540
FSQREKHHHH HQQQQQQAPQ PGIDMSSSLD SERNITAQTS QSFGGNGNFQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-35143204364Zinc finger protein JACKDAW
5b3h_F7e-35143204364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G092100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084941e-167AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599781.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_021599782.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_021599783.10.0protein indeterminate-domain 5, chloroplastic-like
SwissprotQ9ZUL31e-155IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A2C9U6I20.0A0A2C9U6I2_MANES; Uncharacterized protein
STRINGcassava4.1_004194m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-140indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]