PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.17G089800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 175aa MW: 19946.7 Da PI: 10.1326 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 61.4 | 1.9e-19 | 4 | 54 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 YkeC++Nh a+ G+++vDGCgEf+++ + t+a+ CaACgC + +HRr + Manes.17G089800.1.p 4 GIYKECMRNHSAKPGTYTVDGCGEFCSH---QITSAGDYCAACGCAKYWHRRIT 54 57************************98...55789****************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 8.0E-9 | 5 | 52 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.6E-14 | 5 | 52 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 17.49 | 6 | 53 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-17 | 79 | 150 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.96E-10 | 82 | 150 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.4E-19 | 90 | 148 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 175 aa Download sequence Send to blast |
MDRGIYKECM RNHSAKPGTY TVDGCGEFCS HQITSAGDYC AACGCAKYWH RRITLEHLEA 60 PADDTKQVSE EAKKPKLKKV QDQESRFGER KRRKSKFTQF QIEIMKSFAE DLGWTLKHKD 120 RQVHITRFCS RIHVSRSAFK NWVNNNKNRY ASATSSAKSA TKLSPTLLKA DLPN* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00143 | DAP | Transfer from AT1G14687 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.17G089800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021598912.1 | 1e-130 | zinc-finger homeodomain protein 14-like | ||||
TrEMBL | A0A2C9U760 | 1e-129 | A0A2C9U760_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029279m | 1e-130 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7982 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14687.1 | 2e-31 | homeobox protein 32 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.17G089800.1.p |