PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G080200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 686aa    MW: 75301.7 Da    PI: 5.5442
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G080200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4517.9e-1383226811374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          lv+lL++cAeav++++   a+al++++  la +++ +m+++aayf+eALa+r++r    ly    p++  +++ ++ l++   f+e+ P+
  Manes.17G080200.1.p 322 LVHLLMACAEAVQENNIPIAEALVKQIGFLAFSQAGAMRKVAAYFAEALARRIYR----LY----PQSPMDHSLTDILQM--HFYETGPY 401
                          68*****************************************************....44....444443445555444..5******* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lkf+h+taNqaIlea+eg++rvH+iDf+++qG+QWpaLlqaLa Rp+gpp +R+Tg+g+p++++++ l+e+g +La++Ae+++v+fe++ 
  Manes.17G080200.1.p 402 LKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALLQALALRPGGPPAFRLTGIGPPSHDNSDHLQEVGLKLAQLAETIHVEFEYRG 491
                          ****************************************************************************************** PP

                 GRAS 181 lvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +va++l+dl+ ++L+++p   E++aVn+v++lh+ll++++++e+    vL++vk+++P++v++veqea+hn++ Fl+rf+e+l+yys++f
  Manes.17G080200.1.p 492 FVANSLADLDASMLELRPseFESVAVNSVFELHELLARPGAIEK----VLSVVKQMKPEIVTIVEQEANHNGPVFLDRFTESLHYYSTMF 577
                          ******************8789**********************....****************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                          dsle ++   s++++++++++lg++i+nvvacega+r+erhetl++Wr rl+++GF pv+l+++a kqa++ll+ ++ +dgyrvee++g+
  Manes.17G080200.1.p 578 DSLEGSV---SSQDKVMSEVYLGKQICNVVACEGADRVERHETLNQWRTRLGSSGFVPVHLGSNAFKQASMLLALFAgGDGYRVEENNGC 664
                          ******7...9999**************************************************************************** PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          l+lgW++rpL+++SaWr
  Manes.17G080200.1.p 665 LMLGWHTRPLIATSAWR 681
                          ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011292.1E-36107180No hitNo description
PfamPF120411.1E-36107174IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098567.025296660IPR005202Transcription factor GRAS
PfamPF035142.7E-135322681IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MRVPIPNVQI PHSPSPICRR SPLWFLSTTT HHSRSQKPIS SSKTEEIEIQ IMKREHPNLY  60
PRLDPASAGS SSSSYSAIPP ANPNTSTDTS RKAEMWEDEA QVDGGMDELL AVLGYKVRSS  120
DMAEVAQKLE QLEEVMGLVQ EDGLSHLASE TVHFNPSDLS TWLESMLSEF NPNPNFDSVV  180
AAQPSSLDDS FFAPPESSTI TSIDFADHVN QQQRQEYQNT NKHNGRGVVF HESSSSDYDL  240
KAIPGKAVFA QNPQIDSSSF SSRDPKRLKP TTTTTDHLYP ATAASSSSST IVGGGGGGSL  300
GVSTESTRPV VLVDSQENGI RLVHLLMACA EAVQENNIPI AEALVKQIGF LAFSQAGAMR  360
KVAAYFAEAL ARRIYRLYPQ SPMDHSLTDI LQMHFYETGP YLKFAHFTAN QAILEAFEGK  420
KRVHVIDFSM NQGMQWPALL QALALRPGGP PAFRLTGIGP PSHDNSDHLQ EVGLKLAQLA  480
ETIHVEFEYR GFVANSLADL DASMLELRPS EFESVAVNSV FELHELLARP GAIEKVLSVV  540
KQMKPEIVTI VEQEANHNGP VFLDRFTESL HYYSTMFDSL EGSVSSQDKV MSEVYLGKQI  600
CNVVACEGAD RVERHETLNQ WRTRLGSSGF VPVHLGSNAF KQASMLLALF AGGDGYRVEE  660
NNGCLMLGWH TRPLIATSAW RPASK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-6831768413381Protein SCARECROW
5b3h_D6e-6831768413381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G080200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599293.10.0DELLA protein GAIP-B-like
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2C9U6310.0A0A2C9U631_MANES; Uncharacterized protein
STRINGcassava4.1_029701m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein