PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G077200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 237aa    MW: 26086.6 Da    PI: 8.8601
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G077200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.2e-1971125256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq + Lee F+ +++++ +++e LA++l+L+ rqV vWFqNrRa+ k
  Manes.17G077200.1.p  71 RKKLRLSKEQSRLLEESFRHHHTLNPRQKEALAMQLKLKPRQVEVWFQNRRARSK 125
                          788899***********************************************98 PP
2HD-ZIP_I/II1192.6e-3871159189
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                          +kk+rlskeq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
  Manes.17G077200.1.p  71 RKKLRLSKEQSRLLEESFRHHHTLNPRQKEALAMQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 159
                          69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.94E-1956128IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-1757125IPR009057Homeodomain-like
PROSITE profilePS5007116.89267127IPR001356Homeobox domain
SMARTSM003891.5E-1769131IPR001356Homeobox domain
CDDcd000865.82E-1770128No hitNo description
PfamPF000462.3E-1671125IPR001356Homeobox domain
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PfamPF021837.7E-10127161IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.4E-22127170IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAVSPTSSSS LELTISMPGF SSSLSLPSSA GEGGCGVRDL DINQVPSTAV EEWITASMDD  60
DEEITNGAPP RKKLRLSKEQ SRLLEESFRH HHTLNPRQKE ALAMQLKLKP RQVEVWFQNR  120
RARSKLKQTE MECEYLKRWF GSLTEQNRRL QREVEELRAM KVGPPTVISP HSCEPLPAST  180
LTMCPSCERV TTTVTIDKAP TRTTTTTNGT TRATAATLSS KVGTPLLQSR QSSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119127RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G077200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598679.11e-173homeobox-leucine zipper protein HOX3-like isoform X1
SwissprotQ0JKX17e-80HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH387e-80HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2C9U6261e-172A0A2C9U626_MANES; Uncharacterized protein
STRINGcassava4.1_015157m1e-172(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.15e-77homeobox-leucine zipper protein 17