PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.17G075600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 231aa MW: 26173.4 Da PI: 9.2851 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl Manes.17G075600.1.p 13 KGAWSKQEDQKLIDYIRKHGEGSWRTLPQSAGLLRCGKSCRLRWINYL 60 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Manes.17G075600.1.p 66 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111 8999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-23 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.642 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-29 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.74E-10 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.906 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-26 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-15 | 66 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.68E-11 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MRKPCCDKQD TNKGAWSKQE DQKLIDYIRK HGEGSWRTLP QSAGLLRCGK SCRLRWINYL 60 RPDLKRGNFA EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRRKLVNMGI 120 DPNNHRLNRN FPRLQNPQGS FSATSSELKS DTTKTRHDNN NNNNEQASDA ASCLEDSPIA 180 LPDLNLDLTM SIPSSRSFNI SPEAKQKITE SNLSKEPEFA ASSPTLLLFQ * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-30 | 10 | 115 | 4 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.17G075600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021598749.1 | 1e-170 | myb-related protein 308-like | ||||
Swissprot | P81393 | 4e-79 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A2C9U607 | 1e-169 | A0A2C9U607_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_015395m | 1e-169 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38620.1 | 4e-77 | myb domain protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.17G075600.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|