PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G047000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 406aa    MW: 45814.4 Da    PI: 8.0224
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G047000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.72.1e-18178267390
                          EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          k+l++sdv+++gr+vlpk+ aee+    +   +e+++++++d+++ ++W++k+++  ++ks++yvl+ ++ +Fvk+ngL+ gD+++++  
  Manes.17G047000.1.p 178 KELKNSDVGSLGRIVLPKRGAEENlpilS--DKEGMQVVIRDLNSpKEWSLKFKFwsNNKSRMYVLE-NTGDFVKQNGLEIGDSLTLY-- 262
                          899***********************643..45789******7766*******98888888889999.*******************9.. PP

                          SSSEE CS
                   B3  86 grsef 90 
                          +++++
  Manes.17G047000.1.p 263 EDECK 267
                          44555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-25173278IPR015300DNA-binding pseudobarrel domain
CDDcd100178.76E-21175265No hitNo description
SMARTSM010194.2E-18176278IPR003340B3 DNA binding domain
PROSITE profilePS5086310.659176278IPR003340B3 DNA binding domain
SuperFamilySSF1019367.19E-20176272IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-15178268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGGSQNSSTS TPPASSIYGP LSYPSTSSCS STQPYHCPVE YSMLPPFQSL QFPQAYPQGH  60
TGQYSPSTYP LYPCWFLQNG IEKSCFLQPN GVSIEQERRV LDAYKTKVAR TKRKLARQRS  120
LGKNASSGAN LSQVDTRRLS LNGGNNNGQA GLSNININRD LYKICTPDNK RLRVLLSKEL  180
KNSDVGSLGR IVLPKRGAEE NLPILSDKEG MQVVIRDLNS PKEWSLKFKF WSNNKSRMYV  240
LENTGDFVKQ NGLEIGDSLT LYEDECKNLQ YFSIKKVKTP QIEVSYNQNS TNQNYLYIPH  300
MYQARDEEEA SLQLLIEQLN HKEQQEANSL VTLSMDIASS YRRKEEERLS PFNNLTSISF  360
YSQPAPAAME ASSSPHNTMR ILDDHYIDDC YSGLDVLPDV NRYNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A3e-501642741110B3 domain-containing transcription factor LEC2
6j9c_D3e-501642741110B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G047000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598372.10.0B3 domain-containing transcription factor LEC2
TrEMBLA0A2C9U6M40.0A0A2C9U6M4_MANES; Uncharacterized protein
STRINGcassava4.1_026835m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.12e-60B3 family protein