PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G033000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 327aa    MW: 38056.4 Da    PI: 5.4533
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G033000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.8e-15552148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W +eEd +l+++++++G  +W+  +r  g+ R++k+c++rw +yl
  Manes.17G033000.1.p  5 KGKWRPEEDHKLICYIRRYGIWNWNEMPRAAGLSRSGKSCRLRWMNYL 52
                         79******************99************************97 PP
2Myb_DNA-binding53.36.4e-1759102247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          g++++eE++ + +++++lG++ W++Ia++++ gRt++++k++w++ 
  Manes.17G033000.1.p  59 GNFSKEEEDTIFKLHEKLGNR-WSAIAAKLP-GRTDNDIKNYWNSN 102
                          89*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.268152IPR017930Myb domain
SuperFamilySSF466891.72E-28399IPR009057Homeodomain-like
SMARTSM007174.8E-10454IPR001005SANT/Myb domain
PfamPF002497.2E-13552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-20659IPR009057Homeodomain-like
CDDcd001679.40E-8752No hitNo description
PROSITE profilePS5129424.66453107IPR017930Myb domain
SMARTSM007172.0E-1657105IPR001005SANT/Myb domain
PfamPF002498.9E-1659102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2460107IPR009057Homeodomain-like
CDDcd001671.15E-1160103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MALRKGKWRP EEDHKLICYI RRYGIWNWNE MPRAAGLSRS GKSCRLRWMN YLRPFIRHGN  60
FSKEEEDTIF KLHEKLGNRW SAIAAKLPGR TDNDIKNYWN SNLRKRLRNT ASATKLDGLQ  120
TSGGQLKKHL SEGTVPKEIP KSSSSNMANK TDINQDVAHQ NITAGLSKVS LDFKSLQGQS  180
FSMEGLHIRE DNGKILHPFA SDDDLLGFFP PMQNIDFSGE LQYLTWHEEP VYSYNYQDNL  240
FEYPTLWYDE YRVIEENNNN ELSELSGEVF QSLWEQQSCP IMEDLYTAKD ESEREGAGHP  300
FEDFSACYDS NQLSSGEIQF LWDYPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-25310725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G033000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598849.10.0transcription factor MYB4-like
TrEMBLA0A2C9U5J80.0A0A2C9U5J8_MANES; Uncharacterized protein (Fragment)
STRINGcassava4.1_030905m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-47myb domain protein 15