PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G017400.4.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 795aa    MW: 88492.5 Da    PI: 5.3529
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G017400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.6e-2090145156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Manes.17G017400.4.p  90 KKRYHRHTARQIQEMETLFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 145
                          688899***********************************************998 PP
2START148.94.4e-472875112206
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla. 77 
                          la +  +elvk+ +a+ep+W + s  eng+evl  +e +k               + ea r+++vv+m++ +lv  +ld + +W e ++ 
  Manes.17G017400.4.p 287 LAMSSIDELVKMCQATEPLWIRNS--ENGKEVLNFEEHAKMfpwplnlkqhsndLRNEATRDTAVVIMNSITLVDAFLDAN-KWMELFPs 373
                          5667899*****************..**********99999************999*************************.******** PP

                          ...EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS
                START  78 ...kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157
                             +a+t++ + sg     g l+lm+aelq+lsplvp R+ +f+Ry++q  ++g+w+ivd  +d   ++ e + +   +++pSg++i+++
  Manes.17G017400.4.p 374 iiaRAKTVQIVISGvsgasGSLHLMYAELQVLSPLVPtRETYFLRYCQQnVEEGTWAIVDFPIDGFHDNIE-PCFPLYRRRPSGCVIQDM 462
                          *************************************************99*************9999985.44444448********** PP

                          CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +ng+s+vtwveh++ +++ +h+++ ++v sg+a+ga++w+  lqrqce+
  Manes.17G017400.4.p 463 PNGYSRVTWVEHAEIEEKPVHQIFSQFVCSGMAFGAQRWLGVLQRQCER 511
                          ***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-2079148IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-2186153IPR009057Homeodomain-like
PROSITE profilePS5007117.03887147IPR001356Homeobox domain
SMARTSM003898.1E-1988151IPR001356Homeobox domain
CDDcd000863.43E-1890148No hitNo description
PfamPF000469.2E-1890145IPR001356Homeobox domain
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PROSITE profilePS5084843.397277514IPR002913START domain
SuperFamilySSF559611.17E-30278513No hitNo description
CDDcd088759.20E-115281510No hitNo description
SMARTSM002344.0E-27286511IPR002913START domain
PfamPF018523.7E-39287511IPR002913START domain
SuperFamilySSF559611.92E-16556771No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MYGDCQVLSN MGMGANVVSS ENLFSTGMGN PNFEFIPNMP FHSFPSIIPK EESGLMMREK  60
EEMESGSGSG QVEEKSGNEQ DISTEQPPKK KRYHRHTARQ IQEMETLFKE CPHPDDKQRM  120
KLSQELGLKP RQVKFWFQNR RTQMKAQQDR SENIILRTDN ESLKNDNYRL QAELRNLICP  180
SCGGPAMIGG ISFDELRMEN ARLRDELERV CCIASRYTGR PFQSVQPAST LVPPSLDLDM  240
NMYSRQFSDS LGSCTEMMPM VMFPGTSSFA EEDLVLMEEE KTLAMELAMS SIDELVKMCQ  300
ATEPLWIRNS ENGKEVLNFE EHAKMFPWPL NLKQHSNDLR NEATRDTAVV IMNSITLVDA  360
FLDANKWMEL FPSIIARAKT VQIVISGVSG ASGSLHLMYA ELQVLSPLVP TRETYFLRYC  420
QQNVEEGTWA IVDFPIDGFH DNIEPCFPLY RRRPSGCVIQ DMPNGYSRVT WVEHAEIEEK  480
PVHQIFSQFV CSGMAFGAQR WLGVLQRQCE RVASLMARNI SDLGVIPSPE ARKNLMRLAQ  540
RMIRTFSMNV STCGGQSWTA LSDSSDDAVR ITTRKITEPG QPNGVILSAV STTWLPFAHY  600
QVFELLRDER RRSQLDVLSN GNSLHEVAHI ANGSHPGNCI SLLRINVASN SSQHVELMLQ  660
ESCTDQSGSL IVYTTVNVDS IQLAMSGEDP SCIPILPLGF VIIPVESTCN TNTPSEGNSA  720
HSSQHGNCTT NPGCLLTVGL QILASTIPSA KLNLSSVNAI NNHLRNTVHQ ITSALSTSAA  780
SSCPEPNAAP EDKA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G017400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4973872e-40AY497387.1 Populus balsamifera subsp. trichocarpa microsatellite ORPM_030 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598537.10.0homeobox-leucine zipper protein HDG5 isoform X2
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLA0A251ITI50.0A0A251ITI5_MANES; Uncharacterized protein
STRINGcassava4.1_001928m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]