PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.17G017400.3.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

HD-ZIP

Protein Properties

Length: 797aa MW: 88719.7 Da PI: 5.3529

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.17G017400.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.7	2.7e-20	90	145	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k Manes.17G017400.3.p 90 KKRYHRHTARQIQEMETLFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 145 688899***********************************************998 PP
2	START	148.9	4.4e-47	287	511	2	206
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla. 77 la + +elvk+ +a+ep+W + s eng+evl +e +k + ea r+++vv+m++ +lv +ld + +W e ++ Manes.17G017400.3.p 287 LAMSSIDELVKMCQATEPLWIRNS--ENGKEVLNFEEHAKMfpwplnlkqhsndLRNEATRDTAVVIMNSITLVDAFLDAN-KWMELFPs 373 5667899***************..******99999********999*********************.**** PP ...EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS START 78 ...kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157 +a+t++ + sg g l+lm+aelq+lsplvp R+ +f+Ry++q ++g+w+ivd +d ++ e + + +++pSg++i+++ Manes.17G017400.3.p 374 iiaRAKTVQIVISGvsgasGSLHLMYAELQVLSPLVPtRETYFLRYCQQnVEEGTWAIVDFPIDGFHDNIE-PCFPLYRRRPSGCVIQDM 462 *********************************************99*********9999985.44444448****** PP CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +ng+s+vtwveh++ +++ +h+++ ++v sg+a+ga++w+ lqrqce+ Manes.17G017400.3.p 463 PNGYSRVTWVEHAEIEEKPVHQIFSQFVCSGMAFGAQRWLGVLQRQCER 511 *********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.98E-20	79	148	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.6E-21	86	153	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.038	87	147	IPR001356	Homeobox domain
SMART	SM00389	8.1E-19	88	151	IPR001356	Homeobox domain
CDD	cd00086	3.58E-18	90	148	No hit	No description
Pfam	PF00046	9.3E-18	90	145	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	122	145	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.397	277	514	IPR002913	START domain
SuperFamily	SSF55961	1.17E-30	278	513	No hit	No description
CDD	cd08875	9.96E-115	281	510	No hit	No description
SMART	SM00234	4.0E-27	286	511	IPR002913	START domain
Pfam	PF01852	3.7E-39	287	511	IPR002913	START domain
SuperFamily	SSF55961	1.33E-14	556	773	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 797 aa Download sequence Send to blast
MYGDCQVLSN MGMGANVVSS ENLFSTGMGN PNFEFIPNMP FHSFPSIIPK EESGLMMREK 60 EEMESGSGSG QVEEKSGNEQ DISTEQPPKK KRYHRHTARQ IQEMETLFKE CPHPDDKQRM 120 KLSQELGLKP RQVKFWFQNR RTQMKAQQDR SENIILRTDN ESLKNDNYRL QAELRNLICP 180 SCGGPAMIGG ISFDELRMEN ARLRDELERV CCIASRYTGR PFQSVQPAST LVPPSLDLDM 240 NMYSRQFSDS LGSCTEMMPM VMFPGTSSFA EEDLVLMEEE KTLAMELAMS SIDELVKMCQ 300 ATEPLWIRNS ENGKEVLNFE EHAKMFPWPL NLKQHSNDLR NEATRDTAVV IMNSITLVDA 360 FLDANKWMEL FPSIIARAKT VQIVISGVSG ASGSLHLMYA ELQVLSPLVP TRETYFLRYC 420 QQNVEEGTWA IVDFPIDGFH DNIEPCFPLY RRRPSGCVIQ DMPNGYSRVT WVEHAEIEEK 480 PVHQIFSQFV CSGMAFGAQR WLGVLQRQCE RVASLMARNI SDLGVIPSPE ARKNLMRLAQ 540 RMIRTFSMNV STCGGQSWTA LSDSSDDAVR ITTRKITEPG QPNGVILSAV STTWLPFAHY 600 QVFELLRDER RRSQVQLDVL SNGNSLHEVA HIANGSHPGN CISLLRINVA SNSSQHVELM 660 LQESCTDQSG SLIVYTTVNV DSIQLAMSGE DPSCIPILPL GFVIIPVEST CNTNTPSEGN 720 SAHSSQHGNC TTNPGCLLTV GLQILASTIP SAKLNLSSVN AINNHLRNTV HQITSALSTS 780 AASSCPEPNA APEDKA*

Sequence ? help Back to Top

Protein Sequence Length: 797 aa Download sequence Send to blast

MYGDCQVLSN MGMGANVVSS ENLFSTGMGN PNFEFIPNMP FHSFPSIIPK EESGLMMREK  60
EEMESGSGSG QVEEKSGNEQ DISTEQPPKK KRYHRHTARQ IQEMETLFKE CPHPDDKQRM  120
KLSQELGLKP RQVKFWFQNR RTQMKAQQDR SENIILRTDN ESLKNDNYRL QAELRNLICP  180
SCGGPAMIGG ISFDELRMEN ARLRDELERV CCIASRYTGR PFQSVQPAST LVPPSLDLDM  240
NMYSRQFSDS LGSCTEMMPM VMFPGTSSFA EEDLVLMEEE KTLAMELAMS SIDELVKMCQ  300
ATEPLWIRNS ENGKEVLNFE EHAKMFPWPL NLKQHSNDLR NEATRDTAVV IMNSITLVDA  360
FLDANKWMEL FPSIIARAKT VQIVISGVSG ASGSLHLMYA ELQVLSPLVP TRETYFLRYC  420
QQNVEEGTWA IVDFPIDGFH DNIEPCFPLY RRRPSGCVIQ DMPNGYSRVT WVEHAEIEEK  480
PVHQIFSQFV CSGMAFGAQR WLGVLQRQCE RVASLMARNI SDLGVIPSPE ARKNLMRLAQ  540
RMIRTFSMNV STCGGQSWTA LSDSSDDAVR ITTRKITEPG QPNGVILSAV STTWLPFAHY  600
QVFELLRDER RRSQVQLDVL SNGNSLHEVA HIANGSHPGN CISLLRINVA SNSSQHVELM  660
LQESCTDQSG SLIVYTTVNV DSIQLAMSGE DPSCIPILPL GFVIIPVEST CNTNTPSEGN  720
SAHSSQHGNC TTNPGCLLTV GLQILASTIP SAKLNLSSVN AINNHLRNTV HQITSALSTS  780
AASSCPEPNA APEDKA*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.17G017400.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY497387	2e-40	AY497387.1 Populus balsamifera subsp. trichocarpa microsatellite ORPM_030 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021598535.1	0.0	homeobox-leucine zipper protein HDG5 isoform X1
Refseq	XP_021598536.1	0.0	homeobox-leucine zipper protein HDG5 isoform X1
Swissprot	Q9FJS2	0.0	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	A0A251J8R6	0.0	A0A251J8R6_MANES; Uncharacterized protein
STRING	cassava4.1_001928m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Link Out ? help Back to Top
Phytozome	Manes.17G017400.3.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]