PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.17G017400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 797aa MW: 88719.7 Da PI: 5.3529 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.7 | 2.7e-20 | 90 | 145 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k Manes.17G017400.1.p 90 KKRYHRHTARQIQEMETLFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 145 688899***********************************************998 PP | |||||||
2 | START | 148.9 | 4.4e-47 | 287 | 511 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla. 77 la + +elvk+ +a+ep+W + s eng+evl +e +k + ea r+++vv+m++ +lv +ld + +W e ++ Manes.17G017400.1.p 287 LAMSSIDELVKMCQATEPLWIRNS--ENGKEVLNFEEHAKMfpwplnlkqhsndLRNEATRDTAVVIMNSITLVDAFLDAN-KWMELFPs 373 5667899*****************..**********99999************999*************************.******** PP ...EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS START 78 ...kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157 +a+t++ + sg g l+lm+aelq+lsplvp R+ +f+Ry++q ++g+w+ivd +d ++ e + + +++pSg++i+++ Manes.17G017400.1.p 374 iiaRAKTVQIVISGvsgasGSLHLMYAELQVLSPLVPtRETYFLRYCQQnVEEGTWAIVDFPIDGFHDNIE-PCFPLYRRRPSGCVIQDM 462 *************************************************99*************9999985.44444448********** PP CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +ng+s+vtwveh++ +++ +h+++ ++v sg+a+ga++w+ lqrqce+ Manes.17G017400.1.p 463 PNGYSRVTWVEHAEIEEKPVHQIFSQFVCSGMAFGAQRWLGVLQRQCER 511 ***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.98E-20 | 79 | 148 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-21 | 86 | 153 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.038 | 87 | 147 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.1E-19 | 88 | 151 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.58E-18 | 90 | 148 | No hit | No description |
Pfam | PF00046 | 9.3E-18 | 90 | 145 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 122 | 145 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.397 | 277 | 514 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.17E-30 | 278 | 513 | No hit | No description |
CDD | cd08875 | 9.96E-115 | 281 | 510 | No hit | No description |
SMART | SM00234 | 4.0E-27 | 286 | 511 | IPR002913 | START domain |
Pfam | PF01852 | 3.7E-39 | 287 | 511 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.33E-14 | 556 | 773 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 797 aa Download sequence Send to blast |
MYGDCQVLSN MGMGANVVSS ENLFSTGMGN PNFEFIPNMP FHSFPSIIPK EESGLMMREK 60 EEMESGSGSG QVEEKSGNEQ DISTEQPPKK KRYHRHTARQ IQEMETLFKE CPHPDDKQRM 120 KLSQELGLKP RQVKFWFQNR RTQMKAQQDR SENIILRTDN ESLKNDNYRL QAELRNLICP 180 SCGGPAMIGG ISFDELRMEN ARLRDELERV CCIASRYTGR PFQSVQPAST LVPPSLDLDM 240 NMYSRQFSDS LGSCTEMMPM VMFPGTSSFA EEDLVLMEEE KTLAMELAMS SIDELVKMCQ 300 ATEPLWIRNS ENGKEVLNFE EHAKMFPWPL NLKQHSNDLR NEATRDTAVV IMNSITLVDA 360 FLDANKWMEL FPSIIARAKT VQIVISGVSG ASGSLHLMYA ELQVLSPLVP TRETYFLRYC 420 QQNVEEGTWA IVDFPIDGFH DNIEPCFPLY RRRPSGCVIQ DMPNGYSRVT WVEHAEIEEK 480 PVHQIFSQFV CSGMAFGAQR WLGVLQRQCE RVASLMARNI SDLGVIPSPE ARKNLMRLAQ 540 RMIRTFSMNV STCGGQSWTA LSDSSDDAVR ITTRKITEPG QPNGVILSAV STTWLPFAHY 600 QVFELLRDER RRSQVQLDVL SNGNSLHEVA HIANGSHPGN CISLLRINVA SNSSQHVELM 660 LQESCTDQSG SLIVYTTVNV DSIQLAMSGE DPSCIPILPL GFVIIPVEST CNTNTPSEGN 720 SAHSSQHGNC TTNPGCLLTV GLQILASTIP SAKLNLSSVN AINNHLRNTV HQITSALSTS 780 AASSCPEPNA APEDKA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.17G017400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY497387 | 2e-40 | AY497387.1 Populus balsamifera subsp. trichocarpa microsatellite ORPM_030 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021598535.1 | 0.0 | homeobox-leucine zipper protein HDG5 isoform X1 | ||||
Refseq | XP_021598536.1 | 0.0 | homeobox-leucine zipper protein HDG5 isoform X1 | ||||
Swissprot | Q9FJS2 | 0.0 | HDG5_ARATH; Homeobox-leucine zipper protein HDG5 | ||||
TrEMBL | A0A251J8R6 | 0.0 | A0A251J8R6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_001928m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10946 | 30 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |
Link Out ? help Back to Top | |
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Phytozome | Manes.17G017400.1.p |
Publications ? help Back to Top | |||
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