PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.17G014300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C3H | ||||||||
Protein Properties | Length: 354aa MW: 38345.2 Da PI: 6.726 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25 | 3.4e-08 | 94 | 118 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ Manes.17G014300.1.p 94 FKTKLCCKFRA-GTCPYITNCNFAHS 118 69*********.*************8 PP | |||||||
2 | zf-CCCH | 18.6 | 3.3e-06 | 166 | 191 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ Manes.17G014300.1.p 166 YKGRHCKKFYTEEGCPYGDNCTFLHD 191 78888********************7 PP | |||||||
3 | zf-CCCH | 41.8 | 1.8e-13 | 234 | 259 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Manes.17G014300.1.p 234 WKTRICNKWELTGYCPFGNKCHFAHG 259 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.13E-7 | 91 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-14 | 92 | 126 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0035 | 93 | 119 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.84 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-5 | 94 | 118 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-7 | 164 | 193 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-9 | 164 | 193 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.058 | 165 | 192 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.23 | 165 | 193 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-17 | 229 | 263 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.8E-10 | 230 | 264 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.225 | 233 | 261 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-9 | 233 | 260 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-10 | 234 | 259 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MDYGGDFSSA NVVHVIPGAG PENWFPNSMD SNSVWATEDD YHAWSNSDGP SDNIPSISDI 60 QSSQTRSGSE PPNKKSKNNS QEMSSKKSFG KMFFKTKLCC KFRAGTCPYI TNCNFAHSIE 120 ELRRPPPNWQ EIVSAQEEEK GNVVEMREGF QIPSVGGFGG ESQRSYKGRH CKKFYTEEGC 180 PYGDNCTFLH DEQSKNRESV AISLGPGAYG GASLGEGVSG GGSGNGGNVK PSNWKTRICN 240 KWELTGYCPF GNKCHFAHGA AELHRYGGGL MESEAKDGSA PAETKQGGVP SKSPADAVVA 300 SVTTVPHSDV YHAGVPSQRS SILIQRPGQR THEKWKGPDK ISRIYGDWID DVE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.17G014300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021599513.1 | 0.0 | zinc finger CCCH domain-containing protein 12-like | ||||
Swissprot | Q9LQM3 | 1e-127 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A2C9U3U4 | 0.0 | A0A2C9U3U4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_010722m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7751 | 33 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-119 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.17G014300.1.p |