PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G014200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 359aa    MW: 38750.5 Da    PI: 7.1028
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G014200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-0893117126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+lC++f++ GtC+y  +C+FaH+
  Manes.17G014200.1.p  93 FKTKLCCRFRA-GTCPYITNCNFAHS 117
                          69*********.*************8 PP
2zf-CCCH18.63.4e-06165190126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          yk + C+ f+    C+yGd+C+F H+
  Manes.17G014200.1.p 165 YKGRHCKKFYTEEGCPYGDNCTFLHD 190
                          78888********************7 PP
3zf-CCCH41.81.8e-13239264126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt++C+ +  tG+C++G++C+FaHg
  Manes.17G014200.1.p 239 WKTRICNKWELTGYCPFGNKCHFAHG 264
                          8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.13E-790123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-1390125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.88792119IPR000571Zinc finger, CCCH-type
SMARTSM003560.003892118IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-693117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-9163192IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-7163192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23164192IPR000571Zinc finger, CCCH-type
SMARTSM003560.058164191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-17234268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-10235269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225238266IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-9238265IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-10239264IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDYGRDFSSA NVVHVIPGSG PENWFPNSTD SNFVWATEDD YHAWSNSDGP SDNAPSISNI  60
QSSQTRSGSE PPNKKSKNNT QESSKKSIGK MFFKTKLCCR FRAGTCPYIT NCNFAHSIEE  120
LRRPPPNWQE IVSAHEEEKG NVVEMREEFQ IPSVGGFGGE SQRSYKGRHC KKFYTEEGCP  180
YGDNCTFLHD EQSKNRESVA ISLGPGGYGG ATAGGGVSGG GSGSGSGNGN GGNVKPSNWK  240
TRICNKWELT GYCPFGNKCH FAHGAAELHR YGGGLMESEA KDGSAPAETK QGGVPSKSPA  300
DAVVASVTTV PHSDVYHAGV PSQRSSILIQ RPGQRTHEKW KGPDKISRIY GDWIDDVE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G014200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599204.10.0zinc finger CCCH domain-containing protein 12-like
RefseqXP_021599205.10.0zinc finger CCCH domain-containing protein 12-like
SwissprotQ9LQM31e-131C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A2C9U4S80.0A0A2C9U4S8_MANES; Uncharacterized protein
STRINGcassava4.1_010722m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-133C3H family protein