PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.16G123400.3.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 668aa MW: 77297.9 Da PI: 7.0011

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.16G123400.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76	7.8e-24	59	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YAke GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++++ ++++w++ ++el+HnH+++ Manes.16G123400.3.p 59 DFYNVYAKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIVIRLVDSKRWRIVEVELQHNHPVN 143 6*******************999*************99888.....9********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-22	59	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-26	266	358	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.235	552	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.4E-4	558	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-6	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MEEVCLNSEP VFDEGDDYEV EEDCSAEEHE NETGERYLKK EPLPPTVGLE FDSFDEAYDF 60 YNVYAKEQGF GIRVSNSWFR SKRKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMIV 120 IRLVDSKRWR IVEVELQHNH PVNPQIKRFY KSHKKMIIAA QKAQPPPEPV TEVHTIKLYR 180 TALPDAGGDG YSNFDKRDGA NLVDHSKHLK LKEGDAHAVY NYFCRMKLTS PNFFYLMDLD 240 DDGCLRNVFW ADARSRAAYG YFHDTVAIDT TCLANKYEIP LISFVGVNHH GQPSLLGCGF 300 LGHESVEYFV WIFKAWLKCM QGRPPQVIIT DQCKPLQSAV SEVFPEARHC YCLLYIMQKV 360 PERLGGLKGF EAIKRQLNKA VYNSLKIAEF ETSWADMIRQ HGLANNKWLQ TLYEERQRWV 420 PVYLKDIFFA GMIRLQENEG SNAFFDGYVH KHTSFKEFVD KYDLALHRKH LKEAIADLES 480 RNSNFELKTK CNFEAQLSKV YTKEIFKKFQ SEVEGVYSCF NTRQVSVNGP IVTYIVKERV 540 EMEGSEKEVR HFEVLYETSQ VDIRCICSLF NYKGYLCRHA LNVLNYNGVE EIPARYVLPR 600 WSKDFKLKCS PDHVSSNIDV YNPIYWQIHP YKAAIPIVEG GAQSPEHYKI ALQELDDLLN 660 KLNLVDN*

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MEEVCLNSEP VFDEGDDYEV EEDCSAEEHE NETGERYLKK EPLPPTVGLE FDSFDEAYDF  60
YNVYAKEQGF GIRVSNSWFR SKRKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMIV  120
IRLVDSKRWR IVEVELQHNH PVNPQIKRFY KSHKKMIIAA QKAQPPPEPV TEVHTIKLYR  180
TALPDAGGDG YSNFDKRDGA NLVDHSKHLK LKEGDAHAVY NYFCRMKLTS PNFFYLMDLD  240
DDGCLRNVFW ADARSRAAYG YFHDTVAIDT TCLANKYEIP LISFVGVNHH GQPSLLGCGF  300
LGHESVEYFV WIFKAWLKCM QGRPPQVIIT DQCKPLQSAV SEVFPEARHC YCLLYIMQKV  360
PERLGGLKGF EAIKRQLNKA VYNSLKIAEF ETSWADMIRQ HGLANNKWLQ TLYEERQRWV  420
PVYLKDIFFA GMIRLQENEG SNAFFDGYVH KHTSFKEFVD KYDLALHRKH LKEAIADLES  480
RNSNFELKTK CNFEAQLSKV YTKEIFKKFQ SEVEGVYSCF NTRQVSVNGP IVTYIVKERV  540
EMEGSEKEVR HFEVLYETSQ VDIRCICSLF NYKGYLCRHA LNVLNYNGVE EIPARYVLPR  600
WSKDFKLKCS PDHVSSNIDV YNPIYWQIHP YKAAIPIVEG GAQSPEHYKI ALQELDDLLN  660
KLNLVDN*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.16G123400.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021597840.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_021597841.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_021597842.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A251J0T2	0.0	A0A251J0T2_MANES; Uncharacterized protein
STRING	EOY29441	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Manes.16G123400.3.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]