PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G119900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CPP
Protein Properties Length: 907aa    MW: 98583.7 Da    PI: 6.792
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G119900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.73e-15485523341
                  TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          +k+CnCk++kClk+YC+Cfaag +C+e+C C++C+N+ e
  Manes.16G119900.1.p 485 CKRCNCKRTKCLKLYCDCFAAGIYCAESCACQGCFNRPE 523
                          79**********************************876 PP
2TCR49.87e-16568606139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          ++k+gC+Ck+s ClkkYCeC++a++ Cs++C+Ce+CkN 
  Manes.16G119900.1.p 568 RHKRGCHCKRSMCLKKYCECYQANVGCSSDCRCEGCKNV 606
                          589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.8E-15483524IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.021484608IPR005172CRC domain
PfamPF036382.8E-11486521IPR005172CRC domain
SMARTSM011142.2E-18568609IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.2E-11570605IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MDSSPQSASN TTTTTAAATT AIVAAATFSD SSPVQESPFS NYISNLSPIK PVKAAHVAQG  60
FLGVSSPPLV FTSPRIIPHR ETSFFQRSQL AQVPSAETPE NDGGRNNLAG LSDDIGKSVN  120
YSTKSITDSH QENAGENSAR DQPGSSSGCV DEYLYDPVDV DCASSVNLVN PNAKQSNDVL  180
QSSALSEHAE QDQGHSMFEI KPAQVEKEQS SNKQSPIKCP KDESGMTMGH FPEKKQCDVL  240
ESQVVRAQED YNENVGASLQ GALDNIVQRE PEASHLQRGL SRRCLQFGET RWKTVVNSTC  300
SPNLMNNVTS SRSPASAMEL ESLDGSLVDL SDSSSKKQTV NLSRSATSMF PPRGNEKLPI  360
TVSKPSGIGL HLNSIVNTSA VGHTTATNIE SSNCSESSNL VEKIAITPKD RMLETKASLP  420
ASAATADSLH NAEPSNMLQP VGHQTTPLNK RKFNPEHGYN VEEFGQVSPA KKKRKKSSSL  480
DGDGCKRCNC KRTKCLKLYC DCFAAGIYCA ESCACQGCFN RPEYEDTVIE TRQQIESRNP  540
NAFAPKIVQH VAEFAAEDGN QLMPSLARHK RGCHCKRSMC LKKYCECYQA NVGCSSDCRC  600
EGCKNVYGRK EEYGSTGEIA SNIVRKQILD GRIDDKLEMA ATNSDFLHAE LYDLRHLTPS  660
TPSIQHSDHG KDAQVQFNSS RYVPSPESDF SILPSYAKSI SSPSNSHSNN MIPEKGEEIL  720
DIDTCGQGMD YNVAMMDQFS PRHDALVDIC ELTPLQNPSM TQTTSASSKT RDWTGGSRLQ  780
LCPGSGCFSS GRSFRWRSSP ITPLTRLHES KNQGHDTDSG LYDILEDDTP EILKEASTPI  840
TSVKASSPNK KRVSPPHKHI QGLWSSSSGG LRSGRKFILK AVPSFPPLTP CIDSKDSRTE  900
KKDSNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1848660612121Protein lin-54 homolog
5fd3_B3e-1848660612121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1471475KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G119900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596370.10.0protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A2C9UCV00.0A0A2C9UCV0_MANES; Uncharacterized protein
STRINGcassava4.1_029190m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85652841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-55Tesmin/TSO1-like CXC domain-containing protein