PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.16G105900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 388aa MW: 42766.9 Da PI: 7.7731 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.7 | 3.9e-08 | 137 | 157 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck Gd C FaHg Manes.16G105900.1.p 137 ACPDFRK-GNCKKGDACEFAHG 157 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.08 | 84 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-6 | 132 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.751 | 133 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-5 | 136 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-6 | 137 | 157 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.427 | 167 | 191 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 16 | 167 | 190 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 388 aa Download sequence Send to blast |
MMLGERHRPN PTIHVPPWAL LDDTNSDANP SSPLTSHSGN AAIASDYNPC YLQEALAALQ 60 RYLPSNEPDL DSDSELLGLE PGSPVDAYSC DHFRMFEFKV RRCARGRSHD WTECPYAHPG 120 EKARRRDPRK YHYSGTACPD FRKGNCKKGD ACEFAHGVFE CWLHPARYRT QPCKDGTNCR 180 RRVCFFAHTA DQLRVLPQQS PRSLNSVDSY DGSPLRQARE AYCAKSVPFL ASPGSISPPA 240 TPPLESPPMS PITQSLSRSL GSNSINEIVV SLRNLQLGKV NSMPPSCNVH VGGSGFGSPR 300 GSMIRSGFCS LPSTPSGGPT RSGLRYRDVW ENVCEEEPAM ERVESGRDLR TKMFEKLSKE 360 NSLGRVDPDP DQSSKAPDVG WVSELLK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.16G105900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021597894.1 | 0.0 | zinc finger CCCH domain-containing protein 20-like | ||||
Swissprot | Q9M0G2 | 1e-148 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A2C9UAC7 | 0.0 | A0A2C9UAC7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_009450m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-134 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.16G105900.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|