PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.16G096700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

MYB

Protein Properties

Length: 305aa MW: 33980.4 Da PI: 7.9519

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.16G096700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.1	1.6e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed+ll d++k++G g W +++ g++R++k+c++rw++yl Manes.16G096700.1.p 14 RGAWTAQEDKLLTDYIKLHGEGKWGNLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	50.7	4e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E++l+++++++lG++ W++Ia +++ gRt++++k++w++ Manes.16G096700.1.p 67 RGNISPDEEDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7899****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-22	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.532	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.37E-28	12	108	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	8.2E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	6.88E-11	16	61	No hit	No description
PROSITE profile	PS51294	24.965	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-24	65	116	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	8.8E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	3.68E-12	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MGRSPCCAKE GLNRGAWTAQ EDKLLTDYIK LHGEGKWGNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SPDEEDLIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGKKLLKEH 120 NKTLIQNKLA FPSPSSPPKM ASHLFLTKAF DCSKVVAYPH LQLHEIERDT YKSSVKTRPP 180 PASSVIVGEA HVPCNPDKEA PSVAGGENNN NNNDNGDSKD FFMEFAMGNG ADADGFTNFE 240 SCEFNYCNKS NGGEFSTPSP PGLLISEEML QDLTMRTTDF FQPRELSCLS PFTSFLDSGG 300 VWPD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-25	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.16G096700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021597362.1	0.0	transcription factor TT2-like
TrEMBL	A0A2C9UC24	0.0	A0A2C9UC24_MANES; Uncharacterized protein
STRING	cassava4.1_012592m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-62	myb domain protein 3

Link Out ? help Back to Top
Phytozome	Manes.16G096700.1.p